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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGTTTGGTAGAGCTTGGCCTTTTAGAGCACCAGTCAAACCTGGTCTTGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatcaattgtgtctctatattatgattaatcttgtttatatactcaagcatgttgtggccaaatcttgttaatcagtgaaacttttagagagtct...

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524186|gb|BU082997.1|BU082997
EST:     TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTA                         GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
genomic: TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
EST: gi|10235081|gb|BE803969.1|BE803969
EST:     TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTA                         GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
genomic: TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
EST: gi|23728081|gb|BU762085.1|BU762085
EST:     TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTA                         CTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
genomic: TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
EST: gi|10234295|gb|BE803183.1|BE803183
EST:     TATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTA                         GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
genomic: TATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
EST: gi|9259723|gb|BE347870.1|BE347870
EST:     TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTA                         GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
genomic: TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
EST: gi|20812365|gb|BQ296843.1|BQ296843
EST:     TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTA                         GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
genomic: TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
EST: gi|11411513|gb|BF423524.1|BF423524
EST:     TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTA                         GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
genomic: TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
EST: gi|15286897|gb|BI470788.1|BI470788
EST:     TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTA                         GTGATGAAGTAGCAAGTTCATGGCTAAACTTTTTTGCAGTCAGGAAAGCCA
genomic: TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
EST: gi|308099158|gb|HO760999.1|HO760999
EST:     TGTTACATTATGGCCCCAGTTGGCTCAAACTAGGCACGTCGCATGTGTTA                         GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA
genomic: TGTTCCATTATGGCCCCAATTGGCTCAAACTAGGCACGTCGCATGTGTTGtaagttatca ... aaagagcagaGTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCA