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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatcaaacacactattgattaattaaaaattgcttttgtgaaactcttaattaacctcctccattgtttcacgtgtgtatgatcatgggtcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGATCTTTGGGTTACAAGATTGTGGATGAATGGAGGCCATGGAACTCAAATA

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524186|gb|BU082997.1|BU082997
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|10235081|gb|BE803969.1|BE803969
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|31467234|gb|CD409262.1|CD409262
EST:     CTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|15814502|gb|BI786777.1|BI786777
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|10234295|gb|BE803183.1|BE803183
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|9259723|gb|BE347870.1|BE347870
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATANGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|20812365|gb|BQ296843.1|BQ296843
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|11411513|gb|BF423524.1|BF423524
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATGTTCAGT                         GGCGACCATGATATGTGTGTACCGATTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|31467233|gb|CD409261.1|CD409261
EST:     CAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|31475109|gb|CD417137.1|CD417137
EST:     AGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: AGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|15286897|gb|BI470788.1|BI470788
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
EST: gi|26059240|gb|CA802154.1|CA802154
EST:     CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGT                         GGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA
genomic: CTTACCACAAGAACCTAACCAGGCTTGGCTATAGGGCACTTATTTTCAGGtgccaactac ... tcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttaattaacctcctccattgtttcacgtgtgtatgatcatgggtcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGATCTTTGGGTTACAAGATTGTGGATGAATGGAGGCCATGGAACTCAAATA
    aattaac  putative branch site (score: 2)
                  attgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatcaaacacactattgattaattaaaaattgcttttgtgaaactcttaattaacctcctccattgtttcacgtgtgtatgatcatgggtcatggcagtGGCGACCATGATATGTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGATCTTTGGGTTACAAGATTGTGGATGAATGGAGGCCATGGAACTCAAATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - caaacac
- - - - - - - - - - - attaaaaa
- - - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatggg