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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatcaccataattagtgttattaattatgttttattttaacagttaaggtaataaataactgaggatttattttatacataatatctgcacagg

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524186|gb|BU082997.1|BU082997
EST:     TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: gi|10235081|gb|BE803969.1|BE803969
EST:     TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: gi|23728081|gb|BU762085.1|BU762085
EST:     TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: gi|10234295|gb|BE803183.1|BE803183
EST:     TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATTCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: gi|9259723|gb|BE347870.1|BE347870
EST:     TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: gi|20812365|gb|BQ296843.1|BQ296843
EST:     TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: gi|11411513|gb|BF423524.1|BF423524
EST:     TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATTCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: gi|15286897|gb|BI470788.1|BI470788
EST:     TTCATGGCTAAACTTTTTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: gi|308099158|gb|HO760999.1|HO760999
EST:     TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG                         AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGT
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGT
EST: gi|26059240|gb|CA802154.1|CA802154
EST:     TCCATGCTGAATCGG                         -CTTAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATGAAGTAGCAAGTTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatcaccataattagtgttattaattatgttttattttaacagttaaggtaataaataactgaggatttattttatacataatatctgcacagg

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