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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCCTGCTGGTGTTGGGCTCTCTTACTCCAAGAACACAAGCAAATATGCCACTGGGGATCTAGAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGGtacttccaagagaatatattaattagcatttgaaggatatataagaataggatcaaattaacccaattagtatattacgtacgtattattctaatattct...

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8284701|gb|BE022243.1|BE022243
EST:     CACTGGGGATCTAGAAACTGCGTCTGATACCCATGTNTTCCTCTTAAAGT                         GGTTTCAGCAATTTCCG
genomic: CACTGGGGATCTAGAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGGtacttccaag ... aattggcagtGGTTTCAGCAATTTCCG
EST: gi|9258291|gb|BE346438.1|BE346438
EST:     ACCCATGTTTTCCTCTTAAAGT                         GGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAG
genomic: ACCCATGTTTTCCTCTTAAAGGtacttccaag ... aattggcagtGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAG
EST: gi|151401564|gb|EV271378.1|EV271378
EST:     CACTGGGGATCTAGAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGT                         GGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAG
genomic: CACTGGGGATCTAGAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGGtacttccaag ... aattggcagtGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAG