Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgagacatattcatagagaacaacaagatggcagcatgaatgggtttctttttttttttcttctcattattattattatgaataataaaactaattaacaatactgtctctttgttgggtacatgatcatcattgctatgctatcaggCCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCCCCGATGCTGCCACAGCCAAAGAAAATGGAACCTTACCAAGGAGTTTCAA

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524186|gb|BU082997.1|BU082997
EST:     AAAAAGTTGATAGGG                         CCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
genomic: AAAAAGTTGATAGGGtgagacatat ... tgctatcaggCCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
EST: gi|9258291|gb|BE346438.1|BE346438
EST:     TTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGG                         CCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
genomic: TTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGGtgagacatat ... tgctatcaggCCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
EST: gi|23728081|gb|BU762085.1|BU762085
EST:     GACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGG                         CCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
genomic: GACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGGtgagacatat ... tgctatcaggCCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
EST: gi|9259723|gb|BE347870.1|BE347870
EST:     TTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGG                         CCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
genomic: TTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGGtgagacatat ... tgctatcaggCCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
EST: gi|11411513|gb|BF423524.1|BF423524
EST:     TTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGG                         CCATTGATGGGCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC
genomic: TTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGGtgagacatat ... tgctatcaggCCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaacaatactgtctctttgttgggtacatgatcatcattgctatgctatcaggCCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCCCCGATGCTGCCACAGCCAAAGAAAATGGAACCTTACCAAGGAGTTTCAA
 aattaac  putative branch site (score: 2)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgagacatattcatagagaacaacaagatggcagcatgaatgggtttctttttttttttcttctcattattattattatgaataataaaactaattaacaatactgtctctttgttgggtacatgatcatcattgctatgctatcaggCCATTGATGGCCTTAACGTGTACAACATACTAGAGCCATGCTACCATTTCCCCGATGCTGCCACAGCCAAAGAAAATGGAACCTTACCAAGGAGTTTCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG