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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTCTTATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGtattcaataaatattaatttaatttatcaagtacagcttaattcattgttaattaacttattttatatataaggcaataaaattttatatattaacggtt...

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258291|gb|BE346438.1|BE346438
EST:     TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGA                         ATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
genomic: TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGtattcaataa ... aatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
EST: gi|151401564|gb|EV271378.1|EV271378
EST:     TATCCCATTTGTGCACGAGATGGGCCTCATATCCGACAGTATCTATGAG-                         ATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
genomic: TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGtattcaataa ... aatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
EST: gi|9259723|gb|BE347870.1|BE347870
EST:     TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGA                         ATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
genomic: TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGtattcaataa ... aatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
EST: gi|11411513|gb|BF423524.1|BF423524
EST:     CGACAGTATCTATGAGA                         ATTTAAAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
genomic: CGACAGTATCTATGAGGtattcaataa ... aatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG