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taggtaatcaccataattagtgttattaattatgttttattttaacagttaaggtaataaataactgaggatttattttatacataatatctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCACAATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCAGGCTTGG
species | Glycine max |
transcript | GLYMA18G47820.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCEST: gi|10235081|gb|BE803969.1|BE803969
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCEST: gi|23728081|gb|BU762085.1|BU762085
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCEST: gi|10234295|gb|BE803183.1|BE803183
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATTCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCEST: gi|9259723|gb|BE347870.1|BE347870
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCEST: gi|20812365|gb|BQ296843.1|BQ296843
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCEST: gi|11411513|gb|BF423524.1|BF423524
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATTCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCEST: gi|15286897|gb|BI470788.1|BI470788
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: TTCATGGCTAAACTTTTTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCEST: gi|308099158|gb|HO760999.1|HO760999
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
EST: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGG AAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTEST: gi|26059240|gb|CA802154.1|CA802154
genomic: TTCATGGCTAAACAACGTTGCAGTCAGGAAAGCCATCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGT
EST: TCCATGCTGAATCGG -CTTAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
genomic: TCCATGCTGAATCGGtaggtaatca ... tctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATC
acagttaaggtaataaataactgaggatttattttatacataatatctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCACAATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCAGGCTTGG
aaataac putative branch site (score: 2)
taataaataactgagg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggtaatcaccataattagtgttattaattatgttttattttaacagttaaggtaataaataactgaggatttattttatacataatatctgcacaggAAAAAGTGGCGGGTCCGTGGGAATTATGTTCGAGTAGGATAGAGTACCATCACAATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCAGGCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC