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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tataattttttttacatattattatatattgtaaattttaaagtgttttgacgtagaaagccggcaaatatttaataatgataaaatattaaaaggtgcatataaattatgttacgattacacagttttaaagtattgacgtagaaagccagcaaataccttaaatttcatttgacttttgtttcttgtgtaggGTTACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTCTTATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGA

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258291|gb|BE346438.1|BE346438
EST:     AATCCGGAGTGGTACAAAGCCCGTGATCAATTTTAAGG                         GTTACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTC
genomic: AATCCGGAGTGGTACAAAGCCCGTGATCAATTTTAAGGtataattttt ... cttgtgtaggGTTACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTC
EST: gi|151401564|gb|EV271378.1|EV271378
EST:     AATCCGGAGTGGTACAAAGCCCGTGATCAATTTTAAGG                         GTTACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTC
genomic: AATCCGGAGTGGTACAAAGCCCGTGATCAATTTTAAGGtataattttt ... cttgtgtaggGTTACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtagaaagccagcaaataccttaaatttcatttgacttttgtttcttgtgtaggGTTACATGGTTGGAAATGGTGTCACGGACGAAATATTTGACGGCAATGCTCTTATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGA
                              atttgac  putative branch site (score: 4)
                                    cttttgtttcttgt  CT-rich tract
              aaataccttaaattt  TA-rich tract