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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGATCTTTGGGTTACAAGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatattaacacactctctcgaatcactctcacattgttcctatgcctagcaaattcttgtacttgtgtttgtaaagttgttcaattagctagcatccaaataaatacatactacatgaacttaatataaattaatgttcaattgaaatggcattattctttcatttgccacagg

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10235081|gb|BE803969.1|BE803969
EST:     AGATTGTGGATGAATGGAAGCCATGGAACTCAGATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAGCAACCTCACCTTTCTCACGATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|15814502|gb|BI786777.1|BI786777
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|10234295|gb|BE803183.1|BE803183
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|20812365|gb|BQ296843.1|BQ296843
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|31467233|gb|CD409261.1|CD409261
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|31475109|gb|CD417137.1|CD417137
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|15286897|gb|BI470788.1|BI470788
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|10232424|gb|BE801312.1|BE801312
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|26059240|gb|CA802154.1|CA802154
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTGTACCGTTTACTGGAAGTGAGGCTTGGACACGATCTTTGGGTTACAAGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatattaacacactctctcgaatcactctcacattgttcctatgcctagcaaattcttgtacttgtgtttgtaaagttgttcaattagctagcatccaaataaatacatactacatgaacttaatataaattaatgttcaattgaaatggcattattctttcatttgccacagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA