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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaatcaacctagttttttatttttaccaacaaaaaaaaaaagatttgaacccacgatctcttccttcttcattcaccttttcctgggtcaacct...

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10235081|gb|BE803969.1|BE803969
EST:     TACTTGCAAGCGTACGAGAGCAACCTCACCTTTCTCACGATCAAGG                         GAGCTGGGCACACCGTG
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTG
EST: gi|15814502|gb|BI786777.1|BI786777
EST:     TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG                         GAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
EST: gi|10234295|gb|BE803183.1|BE803183
EST:     TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG                         GAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGAATTTT
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
EST: gi|20812365|gb|BQ296843.1|BQ296843
EST:     TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG                         GAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
EST: gi|31467233|gb|CD409261.1|CD409261
EST:     TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG                         GAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
EST: gi|31475109|gb|CD417137.1|CD417137
EST:     TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG                         GAGCTGGGCACACCGTGCCGGAATA-A-GCCGCGGGAGGCGTTGGATTTTT
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
EST: gi|15286897|gb|BI470788.1|BI470788
EST:     TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG                         GAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
EST: gi|10232424|gb|BE801312.1|BE801312
EST:     TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG                         GAGCTGGGCACACCGTGCCGGAATATAAGCCGTGGGAGGCGTTGGATTTTT
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
EST: gi|26059240|gb|CA802154.1|CA802154
EST:     TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG                         GAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT
genomic: TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaat ... atggtgtaggGAGCTGGGCACACCGTGCCGGAATATAAGCCGCGGGAGGCGTTGGATTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGGtaaattaaatcaacctagttttttatttttaccaacaaaaaaaaaaagatttgaacccacgatctcttccttcttcattcaccttttcctgggtcaacct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttttcc