Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tatgcatattaacacactctctcgaatcactctcacattgttcctatgcctagcaaattcttgtacttgtgtttgtaaagttgttcaattagctagcatccaaataaatacatactacatgaacttaatataaattaatgttcaattgaaatggcattattctttcatttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG

Basic information

species Glycine max
transcript GLYMA18G47820.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10235081|gb|BE803969.1|BE803969
EST:     AGATTGTGGATGAATGGAAGCCATGGAACTCAGATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAGCAACCTCACCTTTCTCACGATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|15814502|gb|BI786777.1|BI786777
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|10234295|gb|BE803183.1|BE803183
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|20812365|gb|BQ296843.1|BQ296843
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|31467233|gb|CD409261.1|CD409261
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|31475109|gb|CD417137.1|CD417137
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|15286897|gb|BI470788.1|BI470788
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|10232424|gb|BE801312.1|BE801312
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
EST: gi|26059240|gb|CA802154.1|CA802154
EST:     AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGG                         TACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
genomic: AGATTGTGGATGAATGGAGGCCATGGAACTCAAATAACCAAGTTGCTGGGtatgcatatt ... ttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatataaattaatgttcaattgaaatggcattattctttcatttgccacaggTACTTGCAAGCGTACGAGAACAACCTCACCTTCCTCACAATCAAGG
         aattaat  putative branch site (score: 3)
                                 ttattctttcattt  putative PPT
     tataaattaatgttca  TA-rich tract