1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tattttttgttaaatttttttaattgatgtcttgaaaacattagttagcatttatttggtctcattattgatattatacaaatcaattacaatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGG
species | Glycine max |
transcript | GLYMA18G47820.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGA ATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGEST: gi|151401564|gb|EV271378.1|EV271378
genomic: TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGtattcaataa ... aatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
EST: TATCCCATTTGTGCACGAGATGGGCCTCATATCCGACAGTATCTATGAG- ATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGEST: gi|9259723|gb|BE347870.1|BE347870
genomic: TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGtattcaataa ... aatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
EST: TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGA ATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGEST: gi|11411513|gb|BF423524.1|BF423524
genomic: TATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGtattcaataa ... aatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
EST: CGACAGTATCTATGAGA ATTTAAAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
genomic: CGACAGTATCTATGAGGtattcaataa ... aatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACG
tagcatttatttggtctcattattgatattatacaaatcaattacaatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGG
tattgat putative branch site (score: 3)
tcattattgatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttttgttaaatttttttaattgatgtcttgaaaacattagttagcatttatttggtctcattattgatattatacaaatcaattacaatttgcagaATTTACAATCTTCTTGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATGTGTGTTACAAGACCATTGAAAAAGTTGATAGGG
- - - - - - - - - - - - tgatgtc
- - - - - - - - - - - - - - - - - aaaacatt