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...tacaccaaacttcattaattgtttgtttgcatgtcacaatgatacacgaagcatatgtaataattatacttttttaagttttttgtttttaattggcagtGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTATGCCGGAGTTTATGTGCCTACTCTTGCTTTTGAAGTCGCTAA
species | Glycine max |
transcript | GLYMA18G47820.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACTGGGGATCTAGAAACTGCGTCTGATACCCATGTNTTCCTCTTAAAGT GGTTTCAGCAATTTCCGEST: gi|9258291|gb|BE346438.1|BE346438
genomic: CACTGGGGATCTAGAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGGtacttccaag ... aattggcagtGGTTTCAGCAATTTCCG
EST: ACCCATGTTTTCCTCTTAAAGT GGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAGEST: gi|151401564|gb|EV271378.1|EV271378
genomic: ACCCATGTTTTCCTCTTAAAGGtacttccaag ... aattggcagtGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAG
EST: CACTGGGGATCTAGAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGT GGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAG
genomic: CACTGGGGATCTAGAAACTGCGTCTGATACCCATGTTTTCCTCTTAAAGGtacttccaag ... aattggcagtGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAG
acgaagcatatgtaataattatacttttttaagttttttgtttttaattggcagtGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTATGCCGGAGTTTATGTGCCTACTCTTGCTTTTGAAGTCGCTAA
ttttaat putative branch site (score: 3)
atatgtaataattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaccaaacttcattaattgtttgtttgcatgtcacaatgatacacgaagcatatgtaataattatacttttttaagttttttgtttttaattggcagtGGTTTCAGCAATTTCCGGAATTCCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTATGCCGGAGTTTATGTGCCTACTCTTGCTTTTGAAGTCGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - ccaaact
- - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - gcatgtc
- - - - - - - - - - - - - - - - - - - - -atacacg
- - - - - - - - - - - - - - - - - - - - - - - - - gcatatg