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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatcttaaacttagatggactattaatttaatctcatttatctaaaaattagcttttctgctgactgattatttaattcagacattgcatatattgtatggaaaaaatacgtaaaatatatttctgttatgtattgaattatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTT

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 3'ss of exon 10
------------gtataaatctta--aacttagatggactattaatttaatctcattt--atctaaaaattagcttttctgctgactg--attatttaattcagacattgcatatattgtatggaaaaaatacgtaaaatatatttctg-------ttatgtattgaattatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTT
             |  | ||||||  ||   | |||   | || |   ||  || |||   | |   | || |  |   ||||   ||    | | |||    ||  |  | | ||   | |     | |||   |||  |  ||| ||        | | | |||   | | | ||||||| ||||| || || || ||||| || || ||||| ||||||||||||||||  |||| ||| ||||||||||| || |||||  | ||||||||||
gtatggctttagattcatatcttagcaatgaaaatgtttttttcagacaaattcgttttagtttggcagtttgggtaggtgctaggtgcagctttataagagtgatgtcacgt-taaaatcttagccagatatcaaaataacttttgtgacaaattctgtttcttgggctgttacagGATGTGTATCTGCAGACTACTTGCCTTGCTACGTTGGCTAACATGGCACCTCATGCCCATCATTTAAGTGCATATGCCTCACAGAGGCTTGTCAGCCTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321413|gb|FK012833.1|FK012833
EST:     TGGTCATAATTCTTAGCAGAACTGTACAGTATAATTTGTCAAAACTACGG                         GATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACATGGCACCT
genomic: TGGTCATAATTCTTAGCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatct ... attatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACATGGCACCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatggaaaaaatacgtaaaatatatttctgttatgtattgaattatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTT
                   taaaatatatttctgt  TA-rich tract