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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaacttgaaattttaacatcaaaccttggttatttagttattgtgtattagcagatagtaaacaaatgtgtattgttatttttgcagGACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATGGCCCGTTCTAATGTTCCATCTAATAGGGCAACTTATTCCATCTTGTATG

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685673|gb|AW756321.1|AW756321
EST:     CTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAG                         GACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATG
genomic: CTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAGgttagaactt ... atttttgcagGACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagttattgtgtattagcagatagtaaacaaatgtgtattgttatttttgcagGACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATGGCCCGTTCTAATGTTCCATCTAATAGGGCAACTTATTCCATCTTGTATG
                                           ttattttt  CT-rich tract
                                    tgtattgttattttt  TA-rich tract