Sequence
atgc intronic sequence ATGC exonic sequenceCAATGCTCCAAGTAGGACTGCTAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttgtcttttggcaatatgttttgccgtaaaattacaaggattgcacttaatgctaatttggtatgcgaatcgacag
Basic information
species | Glycine max |
transcript | GLYMA20G28880.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 9
CAATGCTCCAAGTAGGACTGC---TAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttgtcttttggcaatatgttttgccgtaaaattacaaggattgcact--taatgctaatttggtatgcgaatcgacag
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---CGCTTCAAAGAGAACATCATCTAATCAAATATACATGATGCTAATTGTACTTCTCATACTTAGTCAGGATTCATCTTTCAATTCAAGCATTCACAAGATGgtacgtgctatttccaatcatagggttgaaacgatttttctcaacttcagtattgtttctgattatgtgtcatttgaatag----
upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 9
CAATGCTCCAAGTAGGACTGCTAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttgtcttttggcaatatgttttgccgtaaaattacaaggattgcacttaatgctaatttggtatgcgaatcgacag
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TAATGCGTCAAGGAGGACATCTAATCAAATCTACATGTTGTTGATTATCCTTCTTATACTTAGTCAGGATTCCTCTTTCAATGCCAGTATTCACAAGCTGgtaaggatggactct-gtaggcctgctgcattccagttcagtatgtat-gaacc--atattgatgtattatttattttgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192321413|gb|FK012833.1|FK012833EST: TTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTG ATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCT
genomic: TTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttg ... gaatcgacagATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATGCTCCAAGTAGGACTGCTAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttgtcttttggcaatatgttttgccgtaaaattacaaggattgcacttaatgctaatttggtatgcgaatcgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG