Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatactgtcgtggtgcttttgtggttttattgattacaaacttaaactattccttttttctgaattatagattcttttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAG

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321413|gb|FK012833.1|FK012833
EST:     ATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATG                         TCAACTGAATTGCACATTTATACTGACTTCTTGAG-CTTGTACTAGAAATA
genomic: ATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATGgtatatactg ... tttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA
EST: gi|193668384|gb|FK612664.1|FK612664
EST:     ATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATG                         TCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA
genomic: ATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATGgtatatactg ... tttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA
EST: gi|193658848|gb|FK602043.1|FK602043
EST:     ATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATG                         TCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA
genomic: ATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATGgtatatactg ... tttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattacaaacttaaactattccttttttctgaattatagattcttttggtgcagTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAG
 tattgat  putative branch site (score: 3)
                                         ttctttt  putative PPT
                       ttttttctgaattata  TA-rich tract