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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcatgactcatgagtaatttgacctgctaattcttggtgagttattgagcaaactattttttcctgacaagtgaaatttattattattgtagTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTG

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 3
-----gtatatcatgactcatgagtaatttgacctgctaatt---cttggtgagttattgagc--aaactattttt-tcctgacaagtgaaatttattattattgt-------agTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTG
      ||| |  ||  | ||  |    ||    | | | ||    |   ||   | || |    | |  ||| |  | || ||||      |  |||   |||         ||||| || |||   ||||||||||  ||||| ||||| |||||| | || |  ||||||||||| ||||| | |||||||||||| |||||||| ||||||
gtaagttatgtattgtttgatatgcttcttattttcccagttatattcattgttctcttaattttatatcattctgatgctaacaaagtgcttccattcacattccttttccaagTCCTGAGACACACCTCCTACATCATGAGCTACTTAACTTCATGCTCATCGTGATGTCAACTCAGCTTCTTTCTGGGCCATCTCCAGGACCAAAAGATGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttattgagcaaactattttttcctgacaagtgaaatttattattattgtagTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTG
                        tcctgac  putative branch site (score: 2)
                               aagtgaaatttattat  TA-rich tract