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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatgttttatttaaatgaaagtaccaaaatatgctgaccctttgcaatcttgtaacttttaaaggagcaagttttgtgctatctttagtcacattaatgaagcttgtctttgtataataaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacag

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 13
lower sequence: LOC_Os01g56630.1 (Oryza sativa), 5'ss of exon 14
GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatgttttatttaaatgaaagtaccaaaatatgctgaccctttgcaatcttgtaacttttaaaggagcaagttttgtgctatctttagtcacattaatgaagcttgtctttgtataataaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacag
|| |||||||| ||  ||||  | || || || |||||||||||||| || ||||| || ||||||||| || |||| || ||||| || |||||||| ||   || |||  ||| |||||  | ||||| ||     |  |     ||||   |||  |||            |||   | ||||     ||  ||| ||||  ||||||                                                           
GTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAgtatgtgttat---tgcttttcttacatgaacttgccaaagtaca--aatacagaataatcaactaaggtttc----------ctttccacaatctc--accatgtta-tgaa-tttgtctggaag------------------------------------------------------

upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 13
lower sequence: GRMZM2G078576_T04 (Zea mays), 5'ss of exon 14
GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatgttttatttaaatgaaagtaccaaaatatgctgaccctttgcaatcttgtaacttttaaaggagcaagttttgtgctatctttagtcacattaatgaagcttgtctttgtataataaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacag
|| || |||||  || ||||  | || || || ||| ||||||| || |||||||||||||| ||||||||| |||| ||||| || ||||||||||| ||   |||||  |  || |     ||  |  | |   | | |  ||      |    | | | |    |  |  || || |       |||                                                                                
GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgttat---tgtttattgcaacttt---tataagtacacattaatctatt-----ttccagattctcatcatattatattctgagtgtctgatag--------------------------------------------------------------------------------

upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 14
GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatgttttatttaaatgaaagtaccaaaatatgctgaccctttgcaatcttgtaacttttaaaggagcaagttttg-tgctatctttagtcacattaatgaagctt-----gtctttgtataataaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacag-----
|| || ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||| |||| || || || |||||  |   || || |  ||| ||||||  |  ||    |  |||     |  ||   ||||||| || || | || ||||| |||| | || ||  | || | ||       ||||||     || | |  ||  || |  ||| || || |  |||    | |  ||| |  |   |  |||        
GTTGTATATGCAATAATGCACAGACAGGAGGTCTTTCAGCCTTTCAAGAATCATCCACGATTCAATGAGCTGCTTGAAAATATCTACACTgtgagctccagattt--tttgtttaaaccatggtttttatttatct---cttttacaaatcttgcaatttatcaaagagcaggtttaggtggtagttgtaataactgcctataagctttcttagtatctaaattttatagtatgcttgtcta-cgtgcttcagaattatatgatgcctgcttattttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901403|gb|BE610371.1|BE610371
EST:     CATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACT                         GTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGAC
genomic: CATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTgtatgtgtca ... atatttacagGTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGAC