Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagttgtcttttggcaatatgttttgccgtaaaattacaaggattgcacttaatgctaatttggtatgcgaatcgacagATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCTCTTGGTTCGCTCATGGTCATAATTCTTAGCAGAACTGTACAGTATAATT

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 9
gtaagagttgtcttttggcaatatgttttgccgtaaaattacaaggattgcacttaatgctaatttggtatgcgaatcgacagATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCTCTTGGTTCGCTCATGGTCATAATTCTTAGCAGAACTGTACAGTATAATT
|||||  | | || |  | |     |  |||  |  | || ||     |       ||  | || |  |||     | |||||||| |  || ||||||| |||||||||||||||||  | || ||||| ||||||||||| || |||||||||||||| |  || |||||  | |||||  
gtaaggatggactct--gtag-gcctgctgcattccagtt-cagtatgtatgaaccatattgatgtattatttattttgacagATACTTCCTAGTGTTCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321413|gb|FK012833.1|FK012833
EST:     TTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTG                         ATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCT
genomic: TTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttg ... gaatcgacagATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccgtaaaattacaaggattgcacttaatgctaatttggtatgcgaatcgacagATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCTCTTGGTTCGCTCATGGTCATAATTCTTAGCAGAACTGTACAGTATAATT
                             tgctaat  putative branch site (score: 2)
     taaaattacaa  TA-rich tract