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...gtatagtgtcatacactcatagtagttgcaattcattattttggattttgcacattttttagtttttttaaaaaactttgcaacatttattcctctgcagATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCA
species | Glycine max |
transcript | GLYMA20G28880.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTCGACACATAAAGCTTCCCTTTGCTTCATTGTTTGATACACTTGGCAT ATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGEST: gi|7685673|gb|AW756321.1|AW756321
genomic: GCTCGACACATAAAGCTTCCCTTTGCTTCATTGTTTGATACACTTGGCATgtgagtttct ... tcctctgcagATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGG
EST: GCTCGACACATAAAGCTTCCCTTTGCTTCATTGTTTGATACACTTGGCAT ATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGG
genomic: GCTCGACACATAAAGCTTCCCTTTGCTTCATTGTTTGATACACTTGGCATgtgagtttct ... tcctctgcagATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGG
ttttgcacattttttagtttttttaaaaaactttgcaacatttattcctctgcagATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCA
tttattcctct CT-rich tract
attttttagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagtgtcatacactcatagtagttgcaattcattattttggattttgcacattttttagtttttttaaaaaactttgcaacatttattcctctgcagATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCA
- - - - -catacac
- - - - - - - - - - - -agttgca
- - - - - - - - - - - - - - - - - - - - - - - tttgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaaca