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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTGgtatgaggcagcaaacttaagtttctcctattaaaaaagtgggaatgaattaattatttttatatgtaaaagtcaagtagaatttcggatgaagttatgt...

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTGgtatgaggcagcaaa---cttaagtttctcctattaaaaaagtgggaa---tgaattaattatttttatatgtaaaagtcaagtagaatttcggatgaagttatgt-----------------------------------------------------------
 |||||||||||||  || ||  |  | || ||||||||||||||||||||||| | ||||  ||||||||| || ||||| || ||| ||||| | |||||||||  ||  ||      | | |   | | ||      | |        |   |  ||| |  ||| | ||| || || | |    | |   |  ||    |                                                             
TTTAGCTGATGAGGGCGCCGTCTTGCTCCTCTACTCATTGTTGCAAGGGAATTCCGACTTTAAGGAGTATGTGTTGGTGCGAACTGATTTGGATACTTTGgtatgattcataaatgcctctcaataagttccatgggtctatttcattcttttgttccattgtccttaaaagtagaaatccattcctctgttttactaacccttaagatgaagtccttatagtttcatattaatgatctatgctttaatattttttgatggacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321413|gb|FK012833.1|FK012833
EST:     ATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTG                         TTAATGCCAATTCTGGAAGCTCTATACAATGCTCCAAGTAGGACTGCTAAT
genomic: ATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTGgtatgaggca ... aaattaacagTTAATGCCAATTCTGGAAGCTCTATACAATGCTCCAAGTAGGACTGCTAAT
EST: gi|7685673|gb|AW756321.1|AW756321
EST:     ATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTG                         TTAATGCCAATTCTGGAAGCTCTATACAATGCT
genomic: ATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTGgtatgaggca ... aaattaacagTTAATGCCAATTCTGGAAGCTCTATACAATGCT