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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGgtaaacgattttgattgattgagaagatttatcatgtctatttttatctagtttgcagtaatagaaatttacattataaccttttgcatctatcttactgatttcttgtgtgactggggcag

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 13
TCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGgtaaacgattttgattgattgagaagatttatcatgtctatttttatctagtttg---cagtaataga-aatttacattataaccttttgcatctatcttactgatttcttgtgtgactggggcag
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TCAACAGAATTGCATATATACACCGACTTCCTGAGAATTGTCCTCGAAATACTGAACGCAATCCTAACTTATGCCCTGCCTCGAAATCCTGAGgtatcatcatttgtttgtgtggcaactaatacattatagacttgtatctgttatgtctcacaaatatacaaatcttattagcacctttt-catgctttataaaattactcactgtattttgggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321413|gb|FK012833.1|FK012833
EST:     TAGAAATAA-AAATGCAATCCTGACTTATGCACTACCTCG-AATCCTGAA                         GTAGTGTATGCA
genomic: TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGgtaaacgatt ... actggggcagGTAGTGTATGCA
EST: gi|193668384|gb|FK612664.1|FK612664
EST:     TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAG                         GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT
genomic: TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGgtaaacgatt ... actggggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT
EST: gi|9901403|gb|BE610371.1|BE610371
EST:     TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAG                         GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT
genomic: TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGgtaaacgatt ... actggggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT
EST: gi|193658848|gb|FK602043.1|FK602043
EST:     TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAG                         GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT
genomic: TAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGgtaaacgatt ... actggggcagGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAAT