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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtcatatatgttttatttaaatgaaagtaccaaaatatgctgaccctttgcaatcttgtaacttttaaaggagcaagttttgtgctatctttagtcacattaatgaagcttgtctttgtataataaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacagGTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCATGAAGTGCTCCAAGTCATAATTGTCAATTGTCGTTCTT

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 14
gtatgtgtcatatatgttttatttaaatgaaagtaccaaaatatgctgaccctttgcaatcttgtaacttttaaaggagcaagttttg-tgctatctttagtcacattaatgaagctt-----gtctttgtataataaatcatgtttctcaa-gtgtgtgcaaaatgtat--ctattaaatatttac-agGTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCATGAAGTGCTCCAAGTCATAATTGTCAATTGTCGTTCTT
   || |    | || |||| ||||||  |  ||    |  |||     |  ||   ||||||| || || | || ||||| |||| | || ||  | || | ||       ||||||     || | |  ||  || |  ||| || || | |||  |   || | |||      |   |||||   ||||||||||||||||||||||||| |||||||| ||| ||  | ||||||  ||||||||  |  |||| ||||||||||||||  |||| ||  | ||||
--gtgagctccagattttttgtttaaaccatggtttttatttatct---cttttacaaatcttgcaatttatcaaagagcaggtttaggtggtagttgtaataactgcctataagctttcttagtatctaaattttatagtatgcttgtctacgtgcttcagaattatatgatgcctgcttattttttagGTATTAGATTTTTTCAATAGTCGCATGGATGCCCAAGGAATGAATGGTGGATGGTCAGTTGAGAAAGTTCTCCAAGTCATAATCATCAACTGCAGATCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9901403|gb|BE610371.1|BE610371
EST:     CATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACT                         GTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGAC
genomic: CATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTgtatgtgtca ... atatttacagGTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataataaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacagGTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCATGAAGTGCTCCAAGTCATAATTGTCAATTGTCGTTCTT
                             aaaatgtatctattaa  TA-rich tract