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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAGgttagaacttgaaattttaacatcaaaccttggttatttagttattgtgtattagcagatagtaaacaaatgtgtattgttatttttgcag

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 4
GCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAGgtta--gaacttgaaattttaacatcaaaccttggttatttagttattgtgtattagcagatagtaaacaaatgtgtattgttatttttgcag
 || || |||||| || ||  |||||| || || ||||||| ||| || || | ||||||||  |||| |||||| ||| |||||||||||||| ||||||| |   || |    | |||    |    | || |        |||     ||| |         |      |  ||      |||||     
TCTCAACTTCATGCTTGTTACAATGTCGACACAGCTTCTCTCTGGACCTTCACATGGACCAACAGATGCGAACCCTTTTATTGATGCAGCAATGACTCAGgtaaccaaattaattacttttttctttgtctttagcatagatattacctcatatcaatttccgccatttcctttggttcaacgattttcag--

upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 4
GCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAGgttagaacttgaaattttaacatcaaaccttggttatttagttattgtgtattagcagatagtaaacaaatgtgta-----ttgttatttttgcag--------------------
 ||||| |||||| | || |  ||||||||||| ||||| | |||||||||||| |||||||| ||||||||||| ||  ||||||| |||||||||||||| | |     ||  ||     ||   |  |   | | |   | |  | | || |   |   |   || || | |      || | || | |  |                     
ACTTAACTTCATGCTCATCGTGATGTCAACTCAGCTTCTTTCTGGGCCATCTCCAGGACCAAAAGATGTGAACCCATTCATTGATGCGGCAATGGCTCAGgtaacaggaacaatattctctctctctctctctctctctctctctc-tctgttggtgcaggatctccagatctttcaaaatttctcatgtcttaaatcattgatataattgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7685673|gb|AW756321.1|AW756321
EST:     CTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAG                         GACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATG
genomic: CTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAGgttagaactt ... atttttgcagGACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATG