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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcactcttttgtttgccttcataatgttctattccatttctttatgtcttagaacattgtaatcactggttaaaaatctggccaccatatatttgcttcttattag

Basic information

species Glycine max
transcript GLYMA20G28880.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 11
CATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcactcttttgtttgccttcataatgttctattccatttctttatgtcttagaacattgtaatcactggttaaaaatctggccaccatatatttgcttcttattag
  ||||| ||||   | ||||| ||||| |||||||| ||| |  ||||||||||||||||||| ||  | || ||||| ||||| ||||| || ||||||||||   | ||     || |   ||   | ||    |  | |  ||| |  | ||    |     |    |   | |   ||||     | | |||       |  | ||
ACTGCCTTGCAATTCTAGCAAATATGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTGACATGCTCTCTCGCAAgtatgct-cgctcaatctttctcccagtttatttaccttgaatcttttgttacataagtgacacctaaagttaccttatcttctg-----cttttatgcaacattcttcag

upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 11
CATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcactcttttgtttgccttcataatgttctattccatttctttatgtcttagaacattgtaatcactggttaaaaatctggccaccatatatttgcttcttattag
| ||||| || || ||||| ||||||||||||||||  |||| ||| ||||||||||| || |||||  | |||||||||||  | |||||||| || ||||||| || |   ||  | | |||  || ||   |  |  || | ||| |||   | |    |||| | || | | |  ||| ||   | || |                 
CTTGCCTTGCTACGTTGGCTAACATGGCACCTCATGCCCATCATTTAAGTGCATATGCCTCACAGAGGCTTGTCAGCCTTTTCTACATGCTTTCTCGAAAgtatg-caattagttcctcgtcttttta-tgacttcataaatctgtttttgtac-atattcctgta-taacggatcatgaat-tgtttaacacag----------------

upper sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 11
CATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcactcttttgt-ttgccttcataatgttctattccatttctttatgtcttagaacattgtaatcactggttaaaaatctggccaccatatatttgcttcttattag
  || || ||||| ||||| |||||||| |||||||  || ||||| ||||| |||||||| |||||  | || ||||||||||||||||| ||||||||||||||   | || | | |||      |  |  | |     | | ||||   | | ||  | || | |||  |  | |    ||     |   ||   |||  ||       
ACTGTCTCGCAACTTTGGCGAACATGGCTCCTCATGCCCACCGTTTAAGTGCCTATGCATCACAGAGGCTGGTTAGCCTTTTTGATATGCTCTCACGCAAgtatgtttatgttatatattgataatttggtaattttgataaatgctttcattttcagggc-ttatgatcttt--taatttttccttttattgtaatattggatccag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192321413|gb|FK012833.1|FK012833
EST:     GCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAA                         GTATAACAAATTAGCTGAACGCAGAGATAATAAGCTCCATATTGCAAAAGG
genomic: GCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcact ... ttcttattagGTATAACAAATTAGCTGAACGCAGAGATAATAAGCTCCATATTGCAAAAGG