1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatggcagaattctttgattctcctctaatgatattgtgtattattgggtcttatgcaaattttcacaacttgttattcaaaaatgctactccattttgggattggtccttctcaatttgtcttacataatgttgtctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG
species | Glycine max |
transcript | GLYMA04G36870.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|16284488|gb|BI946116.1|BI946116
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|17401398|gb|BM178180.1|BM178180
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|33387440|gb|CA850647.1|CA850647
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|31459632|gb|CD401660.1|CD401660
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: TACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|33388835|gb|CA852042.1|CA852042
genomic: TACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|193693250|gb|FK633771.1|FK633771
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAACCAGAGGGCAAGTTGAAGGGAATTCTTTGGTTACACTGAAGATGEST: gi|16280046|gb|BI943754.1|BI943754
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTT-GGTTACACTGAAGATG
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|254329019|gb|GR833391.1|GR833391
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|254319963|gb|GR829259.1|GR829259
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|16281224|gb|BI944377.1|BI944377
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTTCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|42722894|gb|CK768793.1|CK768793
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAEST: gi|15813897|gb|BI786172.1|BI786172
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|17519507|gb|BM188549.1|BM188549
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|26047146|gb|CA784026.1|CA784026
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|31312127|gb|CD397330.1|CD397330
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCTTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTCGGTTACACTGAAGATGAEST: gi|16282130|gb|BI944853.1|BI944853
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCCA GGAGGAATCAGAGGGCAAGCTGAAAGGAATTCTTGGTTACCCTGAAGATGAEST: gi|16276983|gb|BI942143.1|BI942143
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|193619477|gb|FK570785.1|FK570785
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAACCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|31308669|gb|CD393872.1|CD393872
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|16276702|gb|BI941999.1|BI941999
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: AAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|193686987|gb|FK630342.1|FK630342
genomic: AAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: TGAGGCTGGAGAAGGAAGCCTCCTACGATGAAAATTAAAAATGCTATCAA GGAGGAACCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|31463425|gb|CD405453.1|CD405453
genomic: TGAGGCTGGAGAAGGAAGCCTCCTACGATGAAA-TTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|16277862|gb|BI942602.1|BI942602
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGAEST: gi|26047478|gb|CA784257.1|CA784257
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
EST: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAA GGA--A-TCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
genomic: GTGAGGCTGGAGAAGGAAGCCTCCTACGATGAAATTAAAAATGCTATCAAgtaatggcag ... tctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGA
tccattttgggattggtccttctcaatttgtcttacataatgttgtctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG
gtcttac putative branch site (score: 3)
ttgtctttctc putative PPT
ttacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggcagaattctttgattctcctctaatgatattgtgtattattgggtcttatgcaaattttcacaacttgttattcaaaaatgctactccattttgggattggtccttctcaatttgtcttacataatgttgtctttctcagGGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG