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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGGTCAAGATCGGAATCAACGgtaagtcttctccatccttcgatctcctttctgttgcttcagaacagttcaactatttttctactttttttccattttctctgttttttttttaattaatatttcaattgaaatgtaacag

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207838172|gb|GD812928.1|GD812928
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|12772785|gb|BG237712.1|BG237712
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|24206084|gb|BU965337.1|BU965337
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16277611|gb|BI942471.1|BI942471
EST:     CAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: CAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|213599959|gb|DB966461.1|DB966461
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16279128|gb|BI943272.1|BI943272
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|22525091|gb|BU083902.1|BU083902
EST:     GCAAGGTCAAGATCGAGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGAC
genomic: GCAAGGTCAAGATCG-GAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGAC
EST: gi|15589619|gb|BI674235.1|BI674235
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|14990188|gb|BI315861.1|BI315861
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|213608195|gb|DB963055.1|DB963055
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|213606185|gb|DB961329.1|DB961329
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16277273|gb|BI942295.1|BI942295
EST:     TCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: TCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|213611924|gb|DB960712.1|DB960712
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|15337614|gb|BI498270.1|BI498270
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|15201181|gb|BI424736.1|BI424736
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|120491270|gb|EH219437.1|EH219437
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|120534237|gb|EH262370.1|EH262370
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|8286018|gb|BE023506.1|BE023506
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|24205437|gb|BU964690.1|BU964690
EST:     GCAGTCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GCAGTCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|5058244|gb|AI736720.1|AI736720
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|120534108|gb|EH262241.1|EH262241
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16105674|gb|BI893414.1|BI893414
EST:     CAGTCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: CAGTCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|254329018|gb|GR833390.1|GR833390
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16277410|gb|BI942365.1|BI942365
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|8286017|gb|BE023505.1|BE023505
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16278309|gb|BI942835.1|BI942835
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|24136530|gb|BU927040.1|BU927040
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|9819512|gb|BE555025.1|BE555025
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16283995|gb|BI945850.1|BI945850
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16346115|gb|BI971710.1|BI971710
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|298189268|gb|HO037671.1|HO037671
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16276881|gb|BI942092.1|BI942092
EST:     CAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: CAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16276985|gb|BI942144.1|BI942144
EST:     AGTCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: AGTCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16277574|gb|BI942451.1|BI942451
EST:     AGTCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: AGTCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG