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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttctctctttttgttttctatttatacgattgttgcgtgtaaatgttaagtgtttgttttctctatgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135894|gb|BU926404.1|BU926404
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16284095|gb|BI945903.1|BI945903
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|15589892|gb|BI674508.1|BI674508
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193353199|gb|FK318449.1|FK318449
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193314129|gb|FK282534.1|FK282534
EST:     AGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGTACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTG
genomic: AGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGG-ACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTG
EST: gi|208195728|gb|GD991279.1|GD991279
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCAATTAGTT
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCA-TT-GTT
EST: gi|24206084|gb|BU965337.1|BU965337
EST:     GAGAAGACCCTTCTCTTCTGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193637647|gb|FK583522.1|FK583522
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16277611|gb|BI942471.1|BI942471
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193327303|gb|FK295886.1|FK295886
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193472638|gb|FK435331.1|FK435331
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|213599959|gb|DB966461.1|DB966461
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|208061550|gb|GD859264.1|GD859264
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|23063932|gb|BU578705.1|BU578705
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16279128|gb|BI943272.1|BI943272
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193417333|gb|FK383809.1|FK383809
EST:     ACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: ACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|22525091|gb|BU083902.1|BU083902
EST:     GAAAAGACCCTTCTCTTCCGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|208139474|gb|GD934264.1|GD934264
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTAG
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTT-G
EST: gi|15589619|gb|BI674235.1|BI674235
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|14990188|gb|BI315861.1|BI315861
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|213608195|gb|DB963055.1|DB963055
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|213606185|gb|DB961329.1|DB961329
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|42722894|gb|CK768793.1|CK768793
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16277273|gb|BI942295.1|BI942295
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|213611924|gb|DB960712.1|DB960712
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|15337614|gb|BI498270.1|BI498270
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|15201181|gb|BI424736.1|BI424736
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|120491270|gb|EH219437.1|EH219437
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|120534237|gb|EH262370.1|EH262370
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|8286018|gb|BE023506.1|BE023506
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16279578|gb|BI943508.1|BI943508
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193306110|gb|FK272307.1|FK272307
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|24205437|gb|BU964690.1|BU964690
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|5058244|gb|AI736720.1|AI736720
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|120534108|gb|EH262241.1|EH262241
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16105674|gb|BI893414.1|BI893414
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|208158950|gb|GD958311.1|GD958311
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGA
EST: gi|193575887|gb|FK528532.1|FK528532
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGG
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGG
EST: gi|254329018|gb|GR833390.1|GR833390
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16277410|gb|BI942365.1|BI942365
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|8286017|gb|BE023505.1|BE023505
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCAATG-AAGTCGACTGGAGCTGACATCATTGTTG
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCA-TGGAAGTCGACTGGAGCTGACATCATTGTTG
EST: gi|16278309|gb|BI942835.1|BI942835
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|24136530|gb|BU927040.1|BU927040
EST:     GAGATTACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|15814926|gb|BI787201.1|BI787201
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|9819512|gb|BE555025.1|BE555025
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16283995|gb|BI945850.1|BI945850
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16346115|gb|BI971710.1|BI971710
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|23064001|gb|BU578774.1|BU578774
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|298189268|gb|HO037671.1|HO037671
EST:     AGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: AGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTG-TTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193439720|gb|FK405923.1|FK405923
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16276881|gb|BI942092.1|BI942092
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|18038785|gb|BM307079.1|BM307079
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193367947|gb|FK333011.1|FK333011
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16276985|gb|BI942144.1|BI942144
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|193325300|gb|FK289660.1|FK289660
EST:     AAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16277574|gb|BI942451.1|BI942451
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|23056251|gb|BU577710.1|BU577710
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
EST: gi|16277942|gb|BI942644.1|BI942644
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGCCAGTCACTGTTTTTGGACACAGgtatttttct ... atgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatacgattgttgcgtgtaaatgttaagtgtttgttttctctatgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG
                                 tttgttttctctat  CT-rich tract
                    taaatgttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttttctctctttttgttttctatttatacgattgttgcgtgtaaatgttaagtgtttgttttctctatgaactcagGAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG