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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGGTCTTTTACTCTTCTACTGCCTTCTTAAAACCCTATCTCTCACCAACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaataaccaccacacactcaccgttttcttttcattttcaactctacactccgtttcttccgatgtgatttttcttcttctttcttttctgatatttgttttgttttcaaatgaattgcatggatcag

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207838172|gb|GD812928.1|GD812928
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|12772785|gb|BG237712.1|BG237712
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|24206084|gb|BU965337.1|BU965337
EST:     TTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: TTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|213599959|gb|DB966461.1|DB966461
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|16279128|gb|BI943272.1|BI943272
EST:     CACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: CACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|22525091|gb|BU083902.1|BU083902
EST:     CCGCAGTCATGG                         GCAAGGTCAAGATCGAGAATCAACG
genomic: CCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCG-GAATCAACG
EST: gi|15589619|gb|BI674235.1|BI674235
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|14990188|gb|BI315861.1|BI315861
EST:     CCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: CCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|213608195|gb|DB963055.1|DB963055
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|213606185|gb|DB961329.1|DB961329
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|213611924|gb|DB960712.1|DB960712
EST:     ACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|15337614|gb|BI498270.1|BI498270
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|15201181|gb|BI424736.1|BI424736
EST:     TCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: TCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|120491270|gb|EH219437.1|EH219437
EST:     CCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: CCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|120534237|gb|EH262370.1|EH262370
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|8286018|gb|BE023506.1|BE023506
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|5058244|gb|AI736720.1|AI736720
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|120534108|gb|EH262241.1|EH262241
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|254329018|gb|GR833390.1|GR833390
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|16277410|gb|BI942365.1|BI942365
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|8286017|gb|BE023505.1|BE023505
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|16278309|gb|BI942835.1|BI942835
EST:     CTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: CTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|24136530|gb|BU927040.1|BU927040
EST:     CCACTTTCTTTTTTCCCGCCGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: CCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|9819512|gb|BE555025.1|BE555025
EST:     CTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: CTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|16283995|gb|BI945850.1|BI945850
EST:     CGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: CGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|16346115|gb|BI971710.1|BI971710
EST:     CACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: CACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG
EST: gi|298189268|gb|HO037671.1|HO037671
EST:     ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGG                         GCAAGGTCAAGATCGGAATCAACG
genomic: ACTTCCGCTACTTCCTACTCCAACCACTTTCTTTTTTCCCGCAGTCATGGgtatgcaaat ... catggatcagGCAAGGTCAAGATCGGAATCAACG