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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctatttctagaactaccctaattgcctctcattttcaaaatattgtagttgatttataaattttctgatgtcttgtgtgcctgtaaggctgtaatagttagtgtagggtagaatgttattgatgttactgtgtctgtctttttattaattcag

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G180625_T02 (Zea mays), 5'ss of exon 5
GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctatttctagaactaccctaattgcctctcattttcaaaatattgtagttgatttataaattttctgatgtcttgtgtgcctgtaaggctgtaatagttagtgtagggtagaatgttattgatgttactgtgtctgtctttttattaattcag
|||||| || |||||||| |||     | |||| |||||     | || ||||||||||| || ||||| || ||||| |||||||| |||||| ||||||| |  | ||   |    ||  | |||   | |   ||||| ||| |    |||| || |      ||  ||||  ||||     |||  ||  || | | |||||| | | |                                            
GAACCCCGAGGAGATCCCGTGGGGTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGACAAGGCTGCTGCACATCTGAAGgtat--aatttcggcttcacggtcatt---tgtttgtttcagaatgtacatgttgtttcac-----ttgggatggattgtacatgtgt--ggtggttacatttagtg-atgct--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135894|gb|BU926404.1|BU926404
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16284095|gb|BI945903.1|BI945903
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|15589892|gb|BI674508.1|BI674508
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16278496|gb|BI942934.1|BI942934
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|193314129|gb|FK282534.1|FK282534
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTG
EST: gi|24206084|gb|BU965337.1|BU965337
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16277611|gb|BI942471.1|BI942471
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|254319963|gb|GR829259.1|GR829259
EST:     GCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: GCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|193472638|gb|FK435331.1|FK435331
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|213599959|gb|DB966461.1|DB966461
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|23063932|gb|BU578705.1|BU578705
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16279128|gb|BI943272.1|BI943272
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|193417333|gb|FK383809.1|FK383809
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|22525091|gb|BU083902.1|BU083902
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAACGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGCTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|15589619|gb|BI674235.1|BI674235
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|14990188|gb|BI315861.1|BI315861
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|213608195|gb|DB963055.1|DB963055
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|213606185|gb|DB961329.1|DB961329
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|42722894|gb|CK768793.1|CK768793
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16277273|gb|BI942295.1|BI942295
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|213611924|gb|DB960712.1|DB960712
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|15337614|gb|BI498270.1|BI498270
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATN
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCAT-
EST: gi|15201181|gb|BI424736.1|BI424736
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGGTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|120491270|gb|EH219437.1|EH219437
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|193419775|gb|FK382403.1|FK382403
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAAGAAAGGTTATTATTTCTG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAA-GAA-GGTTATTATTTCTG
EST: gi|120534237|gb|EH262370.1|EH262370
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|8286018|gb|BE023506.1|BE023506
EST:     GTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTTGA-G                         GGTGGTGCAAAGAAGGTT
genomic: GTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTT-GAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTT
EST: gi|208265965|gb|GE061388.1|GE061388
EST:     GTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: GTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|151405695|gb|EV275509.1|EV275509
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16279578|gb|BI943508.1|BI943508
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|24205437|gb|BU964690.1|BU964690
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|5058244|gb|AI736720.1|AI736720
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCNCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|120534108|gb|EH262241.1|EH262241
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16105674|gb|BI893414.1|BI893414
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|254329018|gb|GR833390.1|GR833390
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16277410|gb|BI942365.1|BI942365
EST:     AGTCCACCGGAGTTTTCACCGATAAAGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCGCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|8286017|gb|BE023505.1|BE023505
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATT
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATT
EST: gi|16278309|gb|BI942835.1|BI942835
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|24136530|gb|BU927040.1|BU927040
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|15814926|gb|BI787201.1|BI787201
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|9819512|gb|BE555025.1|BE555025
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16283995|gb|BI945850.1|BI945850
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16346115|gb|BI971710.1|BI971710
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|23064001|gb|BU578774.1|BU578774
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|298189268|gb|HO037671.1|HO037671
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCA
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCA
EST: gi|16276881|gb|BI942092.1|BI942092
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTTAAG-ATGCCCCCAT
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGT-AAGGATGCCCCCAT
EST: gi|18038785|gb|BM307079.1|BM307079
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|193460805|gb|FK427574.1|FK427574
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|193367947|gb|FK333011.1|FK333011
EST:     GTCCACCGGTAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCC-ATG
genomic: GTCCACCGG-AGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16276985|gb|BI942144.1|BI942144
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16277574|gb|BI942451.1|BI942451
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|26047478|gb|CA784257.1|CA784257
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|23056251|gb|BU577710.1|BU577710
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16277942|gb|BI942644.1|BI942644
EST:     AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAG                         GGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctattt ... attaattcagGGTGGTGCAAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCCTGAAGAGATCCCATGGAAGTCGACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGATAAGGCTGCCGCACATTTGAAGgtttctatttctagaactaccctaattgcctctcattttcaaaatattgtagttgatttataaattttctgatgtcttgtgtgcctgtaaggctgtaatagttagtgtagggtagaatgttattgatgttactgtgtctgtctttttattaattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG