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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctattgcttgctatttgtatttcctgttacctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g38920.1 (Oryza sativa), 3'ss of exon 7
---gtgagcctattgcttgctatttgtattt--cctgttacctattatgatacaagttg------ctaattcaggtttatgtttttgttttgcaaac-----cagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG
   |  | |   ||||||  ||||  ||||   |    ||     | || ||| |  |       || |||    || | ||  ||    |   ||      |||||||||||||||||||||||||||| ||    || ||||||||||||||||| ||||||   || |||||||||||||||||||||||||||||||||
gtaggcatcactttgcttaatattaatattggactgagtaaaacgtttggtaccatctatctgatctgatttcaattcaagtgattaacatttgaattcctacagCTACCCAGAAGACTGTTGATGGGCCCTCGATGAAGGACTGGAGAGGTGGAAGGGCTGCTAGCTTCAACATCATTCCTAGCAGCACTGGAGCTGCCAAG

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 3'ss of exon 7
gtgagcctattgcttgctatttgtatttcctgttacctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaacc----agCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG
||  |    |||     ||  |||  |     | |  | || ||       ||   | |||     | |     |||  || ||  |    ||| || |||||||| |||||||| || ||   ||| |||||||| |||||||| |||||    || |||||||| |||||||||||||||||||| |||
gtatgatctttga--agtacctgtgatgttcttcat-tgttgtggcgttgcttagcatttctttgatgtaacactgtgctgtaattcttacagCAACTCAGAAGACCGTTGATGGACCCTCGAGCAAGGACTGGAGGGGTGGAAGGGCTGCCAGTTTCAACATCATCCCTAGCAGCACTGGAGCTGCAAAG

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os08g03290.4 (Oryza sativa), 3'ss of exon 7
gtgagcctattgcttgctatttg-tatttcctgttacctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG--
|| || || ||  | ||| ||||  |  |  | | | |   || |||      |  ||  | | | | ||||  |||||||      |||| ||||| ||||| |||||||| || ||   ||| |||||||| ||||| || || ||    |||||||||||||| ||||||||||| ||||||||   
gtaagact-ttcttggctttttggcagctaatatgaacatcta-gatgttctgtaatagctaacgctgatgtacttgtttt------cagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAAGT

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
gtgagcctattgcttgctatttg-tatttcctgttacctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG
|| || || ||  | ||| ||||  |  |  | | | |   || |||      |  ||  | | | | ||||  |||||||      |||| ||||| ||||| |||||||| || ||   ||| |||||||| ||||| || || ||    |||||||||||||| ||||||||||| |||||||| 
gtaagact-ttcttggctttttggcagctaatatgaacatcta-gatgttctgtaatagctaacgctgatgtacttgtttt------cagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G176307_T01 (Zea mays), 3'ss of exon 7
gtgagcctattg---cttgctatttgtatttcctgttacctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG
|| ||| ||  |    | | ||  ||||     ||||   || | || |    ||   |||| | |    ||||   |  |||      |||||||||||||||||||||||||||| ||| | || |||||||| |||||||| ||||||   || ||||||||||| ||||||||||||||||| |||
gtaagcttagcgaaattggttaaatgtaaaatttgtttagtaatctgtttgttgtctttaatgcggaga-atgtggatccttt------cagCTACCCAGAAGACTGTTGATGGGCCCTCATCTAAGGACTGGAGGGGTGGAAGGGCTGCTAGTTTCAACATCATTCCCAGCAGCACTGGAGCTGCTAAG

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G071630_T02 (Zea mays), 3'ss of exon 6
gtgagcctattgcttgctatttgtatttcctgttacctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaac---cagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG
       |||   |||| |  |   ||   ||  | || || |    |||  || |  |     |   |||  |   | || |  |   |||||||||||||||||||||||||||| ||| | || |||||||| |||||||| ||||||   || ||||||||||| ||||||||||||||||| |||
------gtatgctttgcgaaattggttgaatggaaact-ttgtctagcaatctgtttgtgatcttcagtgtagtaaatgtggatccttgcagCTACCCAGAAGACTGTTGATGGGCCCTCATCTAAGGACTGGAGGGGTGGAAGGGCTGCTAGTTTCAACATCATTCCCAGCAGCACTGGAGCTGCTAAG

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G180625_T02 (Zea mays), 3'ss of exon 7
gtgagcctattgcttgctattt-gtatttcctgttacctattatgataca--agttgctaattcaggtttatgtttttgttttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG
|||||     |  | ||| ||| | | |       |  || |  | |||   |||||    |  |  |  |      || || ||    |||| |||||||||||||||||||| || |||||||| |||||||||||||| || |||||    |||||||||||||| |||||||| || |||||||||
gtgagttctct-ttggctgtttagcaatgttgagaaggtagtcaggtactttagttggctgtaaaattacagcacgatgctt-gcctttcagCCACCCAGAAGACTGTTGATGGACCCTCAGCCAAGGACTGGAGAGGTGGCAGGGCTGCCAGCTTTAACATCATTCCCAGCAGCACCGGTGCTGCCAAG

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 7
gtgagcctattgcttgctatttgtatttcctgt-tacctattatgatacaagttgctaatt-caggtttatgtttttgt-tttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG
       || | ||   |   |||||| |  |  | | |   | | |||  |  | |   |  |   | |     |  |  |||     |||| |||||||| |||||||| || || |||||||| |||||||||||||| || |||||    ||||||||||||||||||||||| || |||||||||
-----gttagttctctttggctgtattcctaggattcttcagaaggtacttgcagttgcctgtaaaatgacagcatgatgcttgactttcagCCACCCAGAAAACTGTTGACGGACCCTCAGCCAAGGACTGGAGAGGTGGCAGGGCTGCCAGCTTTAACATCATTCCTAGCAGCACCGGTGCTGCCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135894|gb|BU926404.1|BU926404
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCACCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16284095|gb|BI945903.1|BI945903
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16284488|gb|BI946116.1|BI946116
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|15589892|gb|BI674508.1|BI674508
EST:     CAGGTTTGGCATTGGTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAA
EST: gi|193454911|gb|FK421240.1|FK421240
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTAGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16280046|gb|BI943754.1|BI943754
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|24206084|gb|BU965337.1|BU965337
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         TTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|254329019|gb|GR833391.1|GR833391
EST:     GTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: GTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|254319963|gb|GR829259.1|GR829259
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|193528392|gb|FK483936.1|FK483936
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|208093066|gb|GD889795.1|GD889795
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|213599959|gb|DB966461.1|DB966461
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAA
EST: gi|16281224|gb|BI944377.1|BI944377
EST:     CCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16279430|gb|BI943432.1|BI943432
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16279128|gb|BI943272.1|BI943272
EST:     CAGGTTTGGCATTGATGANGGTTTGATGACCACTGGTCATTCCATCACTG                         CTACCCAGAAGAACTGT-GATGGGCCATCAGCCCAAGACTGG
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGA-CTGTTGATGGGCCATCAGCCAAAGACTGG
EST: gi|208093197|gb|GD895204.1|GD895204
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|22525091|gb|BU083902.1|BU083902
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGAC
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGAC
EST: gi|42722894|gb|CK768793.1|CK768793
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16277273|gb|BI942295.1|BI942295
EST:     CAAGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCCA-CCAAAGACTGGAGAGGTGGA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATC-AGCCAAAGACTGGAGAGGTGGA
EST: gi|120491270|gb|EH219437.1|EH219437
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATNGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|120534237|gb|EH262370.1|EH262370
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|208265965|gb|GE061388.1|GE061388
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAG
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAG
EST: gi|151405695|gb|EV275509.1|EV275509
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGGAGAGGTGGA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGG-AGAGGTGGA
EST: gi|16279578|gb|BI943508.1|BI943508
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|17519507|gb|BM188549.1|BM188549
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|120534108|gb|EH262241.1|EH262241
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16105674|gb|BI893414.1|BI893414
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTT
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTT
EST: gi|16282130|gb|BI944853.1|BI944853
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|207815439|gb|GD789080.1|GD789080
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|254329018|gb|GR833390.1|GR833390
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|208324538|gb|GE122731.1|GE122731
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16278309|gb|BI942835.1|BI942835
EST:     AGGTTTGGCATTTGT-GAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGT
genomic: AGGTTTGGCATT-GTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGT
EST: gi|31308669|gb|CD393872.1|CD393872
EST:     ATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: ATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|24136530|gb|BU927040.1|BU927040
EST:     CAGGGTTGGCATTGTTGAGGGTTTGATGACCACTGGTCATTCCATCACTG                         CTTACCC-GAAGACTGTTGATGGGGCATCAGCCAAAGACTGGAAAGGTGGA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCT-ACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGA
EST: gi|15814926|gb|BI787201.1|BI787201
EST:     AGGTTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAAACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: AGGTTT-GGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16283995|gb|BI945850.1|BI945850
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCTATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCA
EST: gi|16277862|gb|BI942602.1|BI942602
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16276881|gb|BI942092.1|BI942092
EST:     CAGGTTTGGCATTGTTGAGGGGTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTNGATGGGCCATCAGCCAAAGACTGGAGAGGGTG-A
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGG-TGGA
EST: gi|18038785|gb|BM307079.1|BM307079
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|16277574|gb|BI942451.1|BI942451
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGGTGATGGGCCATCAGGCCAA-GACTGGAGAGGTGGA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAG-CCAAAGACTGGAGAGGTGGA
EST: gi|26047478|gb|CA784257.1|CA784257
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
EST: gi|23056251|gb|BU577710.1|BU577710
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGA
EST: gi|16277942|gb|BI942644.1|BI942644
EST:     CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTG                         CTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA
genomic: CAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCCATCACTGgtgagcctat ... tgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG
                  tgctaat  putative branch site (score: 2)
                                    tttttgtttt  putative PPT
                              tttatgtttttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcctattgcttgctatttgtatttcctgttacctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC