1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtataaattatgttaacataattgttgccttttttcagttgataacttgacattattcattttcctgtttccggaaaggtctgttaaccattttttttaatcattgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG
species | Glycine max |
transcript | GLYMA04G36870.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16284488|gb|BI946116.1|BI946116
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATNGTTGATGCANAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|17401398|gb|BM178180.1|BM178180
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|33387440|gb|CA850647.1|CA850647
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|31459632|gb|CD401660.1|CD401660
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193713395|gb|FK654464.1|FK654464
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|33388835|gb|CA852042.1|CA852042
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16281345|gb|BI944439.1|BI944439
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTTCTCTGAAGATGATGTGGACTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193693250|gb|FK633771.1|FK633771
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTTATTTTTTGATGCAAAGGCTGGAAEST: gi|16280046|gb|BI943754.1|BI943754
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGT-ATTTTT-GATGCAAAGGCTGGAA
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTNTGTGGGCGATAGCAG ATCAAGTATNTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|254329019|gb|GR833391.1|GR833391
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|254319963|gb|GR829259.1|GR829259
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|213608744|gb|DB980754.1|DB980754
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: AGTTACACTGAAGATGATGTGGTCTCCAACGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16281224|gb|BI944377.1|BI944377
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTTGEST: gi|16276013|gb|BI941632.1|BI941632
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTT-G
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193537333|gb|FK495390.1|FK495390
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACCTTGTEST: gi|193683185|gb|FK621385.1|FK621385
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|15813897|gb|BI786172.1|BI786172
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|17519507|gb|BM188549.1|BM188549
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|26047146|gb|CA784026.1|CA784026
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|31312127|gb|CD397330.1|CD397330
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|31465564|gb|CD407592.1|CD407592
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: AAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16282130|gb|BI944853.1|BI944853
genomic: AAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACCCTGAAGATGATGCGGTCTCCACCGACTATGAAGGCGATAGCAG ATCAAGTATTTTTGAEST: gi|16276983|gb|BI942143.1|BI942143
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGA
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193619477|gb|FK570785.1|FK570785
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGAATAGCAAAGGCTGGAAEST: gi|193692075|gb|FK628062.1|FK628062
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGA-T-GCAAAGGCTGGAA
EST: ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|31308669|gb|CD393872.1|CD393872
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16276702|gb|BI941999.1|BI941999
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193686987|gb|FK630342.1|FK630342
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTTATTTTTTGATGCAAAGGCTGGAAEST: gi|31463425|gb|CD405453.1|CD405453
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGT-ATTTTT-GATGCAAAGGCTGGAA
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|16277862|gb|BI942602.1|BI942602
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTNTGTGGGCGATAGCAG ATCAAGTATNTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTEST: gi|193479907|gb|FK447674.1|FK447674
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGGATAGCAG ATCAAGTATTTTTGTATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTEST: gi|193559218|gb|FK512071.1|FK512071
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGC-GATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTG-ATGCAAAGGCTGGAATTGCATTGAATAAGAACTTT
EST: ACTGAAGATGATGTGGTCTCCATCGACTTTG-GGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGACTGGAATTGCATTGAATAAGAACTTTGEST: gi|193460560|gb|FK428001.1|FK428001
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGG-CTGGAATTGCATTGAATAAGAACTTTG
EST: ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGEST: gi|16281767|gb|BI944657.1|BI944657
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGC-GATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG
EST: GTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGNEST: gi|26047478|gb|CA784257.1|CA784257
genomic: GTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG-
EST: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAAAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
cattttcctgtttccggaaaggtctgttaaccattttttttaatcattgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG
ttgttcc CT-rich tract
ttaaccatttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaattatgttaacataattgttgccttttttcagttgataacttgacattattcattttcctgtttccggaaaggtctgttaaccattttttttaatcattgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC