Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttctccatccttcgatctcctttctgttgcttcagaacagttcaactatttttctactttttttccattttctctgttttttttttaattaatatttcaattgaaatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g38920.1 (Oryza sativa), 3'ss of exon 2
gtaagtcttctccatccttcgatctcctttctgttgcttcagaacagttcaactatttttctactttttttccattttctctgttttt-tttttaattaatatttc-aattgaaatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT
                           |   ||||    || |  | |  | ||  || | |  |  | |    |||  || ||     ||| | ||  || |||    ||   |||   |||| || ||  | || ||| |  |||||||||||||||| |||||||| || ||||| || ||||||||||| |||||||| ||||| |||||||| |||||
--------------------------gtgagtgttcgagcatacgattggatctggttattttatggtatggggtttattcggtgcggatttgtgatggatttttttggtttggatgatgcagGGTTCGGCCGCATCGGCAGGCTGGTGGCCAGGGTGGCGCTGCAGAGCGAGGATGTCGAGCTCGTTGCCGTCAACGATCCCTTCATCACCACCGAGTACAT

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g38920.2 (Oryza sativa), 3'ss of exon 1
gtaagtcttctccatccttcgatctcctttctgttgcttcagaacagttcaactatttttctactttttttccattttctctgttttttttttaattaatatttcaattgaaatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT
                    | |     |||      | |       |     ||||||      |    |  |||   |  |  ||| |  |   |  | |||   ||   |||   |||| || ||  | || ||| |  |||||||||||||||| |||||||| || ||||| || ||||||||||| |||||||| ||||| |||||||| |||||
------------------atggtgagtgttcgagca-tacgattggatctggttattttatggtatggggtttattcggtgcggatttgtgatggat--ttttttggtttggatgatgcagGGTTCGGCCGCATCGGCAGGCTGGTGGCCAGGGTGGCGCTGCAGAGCGAGGATGTCGAGCTCGTTGCCGTCAACGATCCCTTCATCACCACCGAGTACAT

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 3'ss of exon 2
gtaagtcttctccatccttcgatctcctttctgttgcttcagaacagttcaactatttttctactttttttccattttctctgttttttttttaattaatatttcaattgaaatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT
                  |   |      |  ||  || |||| | ||       ||| |     | ||| |    || |  |  |   |||| |||    ||  |  || | |||   ||| || || || || ||  |  | |||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || ||||| |||||||| |||||
-----------------gtgagttggaccttcgt--ctccagatctgtgt-----tttgtgccggtgtttgcggggttttgggggtgggttttgattg---ttggatgtggattgtg-tagGGTTCGGGAGGATCGGGAGGCTCGTGGCCAGGGTGGCCCTGCAGAGCGACGACGTCGAGCTCGTCGCCGTCAACGACCCCTTCATCACCACCGACTACAT

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os08g03290.2 (Oryza sativa), 3'ss of exon 1
gtaagtcttctccatccttcgat-ctcctttctgttgc-ttcagaacagttcaactatttttctactttttttccattttctctgttttttttttaattaatatttcaattgaaatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT
|| ||| | ||   |   |   | |   ||| || ||   |  |    |||    |   ||| |  |  |||       |    ||||||| | |  ||   |||   |||    |    |||| || ||||| || ||  |  | |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||||| |||||||| |||||
gtgagtttgctatctgaattactacgagtttgtgctgtgctgggtgtggtttcgttggatttgtggtgatttgag----tgggggttttttgtgtgtttgggattgtgattttgtt----cagGTTTCGGAAGGATCGGGAGGCTCGTGGCCAGGGTGGCCCTCCAGAGCGAGGATGTCGAGCTCGTCGCCGTCAACGACCCCTTCATCACCACCGACTACAT

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G176307_T01 (Zea mays), 3'ss of exon 2
gtaagtcttctccatccttcgatctcctttctgttgcttcagaacagttcaactatttttctactttttttccattttctctgttttttttttaattaatatttcaattgaaatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT
|| |||   |   ||||| ||||||   ||  | ||  |  ||   |||   |   |  | |   |||||  | ||||      |||||| ||  |                      |||| || || || || ||  |  ||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| || ||||| | |||||| |||||
gtgagttcgc---atcctccgatctgagttgagatgtatttga---gttacgccggtcgtgtgggtttttatcgtttt------ttttttgttggt---------------------gcagGGTTCGGCAGGATCGGAAGGCTGGTGGCCAGGGTGGCTCTGCAGAGTGACGATGTCGAGCTCGTCGCCGTGAACGACCCCTTCATCAGCACCGACTACAT

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G071630_T01 (Zea mays), 3'ss of exon 2
gtaagtcttctccatccttcgatctcctttctgttgcttcagaacagttcaactatttttctactttttttccattttctctgttttttttttaattaatatttcaattgaaatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT
                                ||   |||  | |     | |    || | |  | |||   | |  | | |||  | |     || |   ||| |||    ||   |||| ||||| || || ||  |  |||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || ||||| | ||||||||||||
--------------------------------gtgagttcgcatcctcggatcccagttacgatgtatttg--agtcacaccgttcgtgtcggttttgaccgttctattttgttggtgcagGGTTTGGCAGGATCGGAAGGCTGGTGGCCAGGGTGGCCCTGCAGAGCGACGACGTCGAGCTCGTCGCCGTGAACGACCCCTTCATCAGCACCGATTACAT

upper sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G180625_T02 (Zea mays), 3'ss of exon 2
gtaagtcttctccatccttcgatctcctttctgttgcttcagaacagttcaactatttttctactttttttccatttt---ctctgttttttttttaattaa-tatttcaattgaaatgtaa-cagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT
                             |||||  |  ||  |||       | ||  |   |  ||  |    | |   |||||   |  | | | |    | | |          ||   |||| || ||||| || ||| |  | ||||||||||| || |||||||| || ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
------------------------gtgagtctgtacccccaacacaaactcgttcttcctgctcggttcgttgggtctggactctggagtgatctgagtggggtctctgcgcgcctgcgtgctcagGTTTCGGAAGGATCGGCAGGCTCGTGGCCAGGGTCGCCCTGCAGAGCGAGGATGTCGAGCTCGTCGCCGTCAACGACCCCTTCATCACCACGGATTACAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207838172|gb|GD812928.1|GD812928
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|12772785|gb|BG237712.1|BG237712
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|24206084|gb|BU965337.1|BU965337
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16277611|gb|BI942471.1|BI942471
EST:     CAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: CAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|213599959|gb|DB966461.1|DB966461
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16279128|gb|BI943272.1|BI943272
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|22525091|gb|BU083902.1|BU083902
EST:     GCAAGGTCAAGATCGAGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGAC
genomic: GCAAGGTCAAGATCG-GAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGAC
EST: gi|15589619|gb|BI674235.1|BI674235
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|14990188|gb|BI315861.1|BI315861
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|213608195|gb|DB963055.1|DB963055
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|213606185|gb|DB961329.1|DB961329
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16277273|gb|BI942295.1|BI942295
EST:     TCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: TCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|213611924|gb|DB960712.1|DB960712
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|15337614|gb|BI498270.1|BI498270
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|15201181|gb|BI424736.1|BI424736
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|120491270|gb|EH219437.1|EH219437
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|120534237|gb|EH262370.1|EH262370
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|8286018|gb|BE023506.1|BE023506
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|24205437|gb|BU964690.1|BU964690
EST:     GCAGTCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GCAGTCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|5058244|gb|AI736720.1|AI736720
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|120534108|gb|EH262241.1|EH262241
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16105674|gb|BI893414.1|BI893414
EST:     CAGTCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: CAGTCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|254329018|gb|GR833390.1|GR833390
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16277410|gb|BI942365.1|BI942365
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|8286017|gb|BE023505.1|BE023505
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16278309|gb|BI942835.1|BI942835
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|24136530|gb|BU927040.1|BU927040
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|9819512|gb|BE555025.1|BE555025
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16283995|gb|BI945850.1|BI945850
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16346115|gb|BI971710.1|BI971710
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|298189268|gb|HO037671.1|HO037671
EST:     GGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: GGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16276881|gb|BI942092.1|BI942092
EST:     CAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: CAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16276985|gb|BI942144.1|BI942144
EST:     AGTCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: AGTCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
EST: gi|16277574|gb|BI942451.1|BI942451
EST:     AGTCATGGGCAAGGTCAAGATCGGAATCAACG                         GATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG
genomic: AGTCATGGGCAAGGTCAAGATCGGAATCAACGgtaagtcttc ... aatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttccattttctctgttttttttttaattaatatttcaattgaaatgtaacagGATTTGGAAGAATTGGCCGTTTGGTGGCCAGGGTGGCTCTGCAGAGAGACGATGTTGAACTCGTTGCCGTTAACGATCCTTTCATTACCACCGATTACAT
                           aattaat  putative branch site (score: 3)
       attttctctgtttttt  TA-rich tract