Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaattcaccggattctgtttaatggattttttttgtgttggttgtgactattatagtccttactgtttcttgtcaattttgcag

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 5'ss of exon 6
CATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaattcaccggattctgtttaatggatttttt---ttgtgttg-gttgtgactattatagtccttactgtttcttgtcaattttgcag----------------------
|||||||||||||||||| || ||| | ||||||||||| ||  | |||||| | ||||||||||||||||| |||||||||||||| || || |||||||| ||    ||||    ||    ||      | ||     |||||| | | ||| |  |   | |||  ||||      ||  |   |||                         
CATGTTTGTTGTTGGTGTCAATGAGAAGGAGTACAAGCCTGACATCGACATTGTGTCCAATGCTAGCTGCACCACCAACTGCCTTGCTCCACTTGCCAAGgtgtgttcctcactcattttcacttgtctactgttgcaaattgtgtggtgatgttaagaaattggtcactactaccatatga-agccttgtccttatcaaattgtctgcctgcag

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g38920.1 (Oryza sativa), 5'ss of exon 6
CATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaattcaccggattctgtttaatggattttttttgtgttggttgtgactattatagtcctta-ctgtttcttgtcaattttgcag
|||||| ||||||||||| |||||| | ||||||||| | ||  || ||||| | ||||| ||||| ||||| ||||||||||| || || ||||||||||| |  | |       | | ||     ||    |  | || |   || |  |||| |  |||  | | ||     ||     | || |||
CATGTTCGTTGTTGGTGTCAACGAGAAGGAGTACAAGTCTGACGTTAACATTGTCTCCAACGCTAGTTGCACCACCAACTGCCTGGCTCCTCTCGCCAAGgtgtttattctgatataatttggcgcctg---ctcctgtgcgcatgtagctactactggagttttaagctaacattttgtcttgttacag

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G176307_T01 (Zea mays), 5'ss of exon 6
CATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgca-attcaccggattctgtttaatggattttttttgtgttggttgtgactattatagtccttactgtttcttgtcaattttgcag
||||||||| |||||||| |||||| | ||||||||| | ||  || ||||| | |||||||||||||||||||||||||||||||| || || || |||||    |   | |     | |||    ||  |||  | ||  |     | |  |   || | |       ||| ||| |   |  |||||
CATGTTTGTCGTTGGTGTCAACGAGAAGGAGTACAAGTCTGACATTAACATTGTCTCCAATGCTAGCTGCACAACCAACTGCCTTGCTCCTCTTGCTAAGgtgcttatgctgatttactgctgcc--ataaattgctcttagggatcctatatcacctaaaattg-----gttacttatttttgctgcag

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G071630_T02 (Zea mays), 5'ss of exon 5
CATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaattcaccggattctgttta-atggattttttttgtgttggttgtgactattatagtccttactgtttcttgtcaattttgcag
|||||| ||||||||||| |||||| | ||||||||| | ||  |  ||||| | || ||||||||||||||||||||||||||||| ||||| || |||||    |  |  |   |  ||| | | ||  |||  | ||  |     | | | |||  ||   ||   |  || || |   |  |||||
CATGTTCGTTGTTGGTGTCAACGAGAAGGAGTACAAGTCTGACATCAACATTGTCTCTAATGCTAGCTGCACAACCAACTGCCTTGCTCCGCTTGCTAAGgtgcttatgttgcttta--ctgctgacataaattgctcttaggcattctat-attatc-taaaactggttacttttttttt-tgctgcag

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G046804_T02 (Zea mays), 5'ss of exon 6
CATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaattcacc----ggattctgtttaatggattttttttgtgttggttgtgactattatagtccttactgtttcttgtcaattttgcag
|||||||||||||||||| || ||| || ||||||   | ||  || ||||| ||||||||||||||||||| || ||||||||||| || || || |||||   |  | |  |          | | ||   | || |  |  |      |  ||  |||   ||      ||| |  ||||| |    |||
CATGTTTGTTGTTGGTGTCAATGAGGACAAGTACACCTCGGATGTTAACATTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgcactgtccttctcttaagcattctgtagctgtttctgctcttccaatgtaggatcattt--gttaacgatgtctagtgtca-taaaccag

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G180625_T02 (Zea mays), 5'ss of exon 6
CATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaattcacc--ggattctgtttaatggattttttttgtgttggttgtgactattatagtccttactgtttcttgtcaattttgcag
|||||||||||||||||| || ||| || ||||||   | ||  || ||||| ||||||||||||||||||| || ||||||||||| || || || ||||| |||  | |  |    ||  | ||| ||   ||  |    | |  || ||        |  |   |  | | |  ||||| |    |||
CATGTTTGTTGTTGGTGTCAATGAGGACAAGTACACCTCCGATGTTAACATTGTTTCCAATGCTAGCTGCACCACAAACTGCCTTGCTCCCCTTGCTAAGgtgtgctgtccttcttaaatcattttttatctgttcctgccct-tccgtcgtagaatcatttattaatgatatctaatgtca-taaaccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24135894|gb|BU926404.1|BU926404
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16284095|gb|BI945903.1|BI945903
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16284488|gb|BI946116.1|BI946116
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|15589892|gb|BI674508.1|BI674508
EST:     TTATTTCCCATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGGTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|193454911|gb|FK421240.1|FK421240
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16278496|gb|BI942934.1|BI942934
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATG
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATG
EST: gi|16280046|gb|BI943754.1|BI943754
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|24206084|gb|BU965337.1|BU965337
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16277611|gb|BI942471.1|BI942471
EST:     TTATGTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTT
EST: gi|254319963|gb|GR829259.1|GR829259
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|193528392|gb|FK483936.1|FK483936
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|213599959|gb|DB966461.1|DB966461
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16279430|gb|BI943432.1|BI943432
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|207732638|gb|GD708119.1|GD708119
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16279128|gb|BI943272.1|BI943272
EST:     TATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCCAAG                         -TTATCAATGACAGGTTTGGCATTGATGANGGTTTGATGACCACTGGTCA
genomic: TATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCC-AAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCA
EST: gi|208093197|gb|GD895204.1|GD895204
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|22525091|gb|BU083902.1|BU083902
EST:     TTATTTCCAATGCTAGCTGCACGACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|42722894|gb|CK768793.1|CK768793
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16277273|gb|BI942295.1|BI942295
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAAGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|213611924|gb|DB960712.1|DB960712
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|15201181|gb|BI424736.1|BI424736
EST:     TATTTTCCA-TGGTAGCTGCACAACCAACTGCCTTGTCCCGCTCCCCCAG                         GGTATCAATGACAAGGTT-GGCATT
genomic: TATTT-CCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACA-GGTTTGGCATT
EST: gi|120491270|gb|EH219437.1|EH219437
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|120534237|gb|EH262370.1|EH262370
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|208265965|gb|GE061388.1|GE061388
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|151405695|gb|EV275509.1|EV275509
EST:     TTATTTCCAATGCTAGCTACACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16279578|gb|BI943508.1|BI943508
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|17519507|gb|BM188549.1|BM188549
EST:     TGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|120534108|gb|EH262241.1|EH262241
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16105674|gb|BI893414.1|BI893414
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16282130|gb|BI944853.1|BI944853
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|207815439|gb|GD789080.1|GD789080
EST:     TATTTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TA-TTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|254329018|gb|GR833390.1|GR833390
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16277410|gb|BI942365.1|BI942365
EST:     TTATGTGCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGGCAAA                         GTTATCAATGACAGGTTTGGCATTGGTGAGGGT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGT
EST: gi|208324538|gb|GE122731.1|GE122731
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16278309|gb|BI942835.1|BI942835
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTTGT-GAGGGTTTGATGACCACTGTTCA
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATT-GTTGAGGGTTTGATGACCACTGTTCA
EST: gi|24136530|gb|BU927040.1|BU927040
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGGTTGGCATTGTTGAGGGTTTGATGACCACTGGTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|15814926|gb|BI787201.1|BI787201
EST:     TATTTCCAATGCTAGCTGCACAAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAAATGACAGGTTTTGGCATTGTTGAGGGTTTGATGACCACTGTTC
genomic: TATTTCCAATGCTAGCTGCACAA-CCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAA-TGACAGGTTT-GGCATTGTTGAGGGTTTGATGACCACTGTTC
EST: gi|16283995|gb|BI945850.1|BI945850
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16277862|gb|BI942602.1|BI942602
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16276881|gb|BI942092.1|BI942092
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGGTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|18038785|gb|BM307079.1|BM307079
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|193460805|gb|FK427574.1|FK427574
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGAC
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGAC
EST: gi|16276985|gb|BI942144.1|BI942144
EST:     TTATTTGCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCCATGACAGGTTTGGCATTGTTGAGGGTTTGAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGAT
EST: gi|16277574|gb|BI942451.1|BI942451
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|26047478|gb|CA784257.1|CA784257
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|23056251|gb|BU577710.1|BU577710
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
EST: gi|16277942|gb|BI942644.1|BI942644
EST:     TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAG                         GTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT
genomic: TTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaatt ... aattttgcagGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACCACTGTTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGTTTGTTGTTGGTGTTAACGAGCACGAGTACAAGCCAGAGCTTGACATTATTTCCAATGCTAGCTGCACAACCAACTGCCTTGCCCCGCTCGCCAAGgtttgcaattcaccggattctgtttaatggattttttttgtgttggttgtgactattatagtccttactgtttcttgtcaattttgcag

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