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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtacacctttaaccttttcttgtatgtgatagtagtgggttagtgtgtcaataagttcttaattcggccaaaaatctaatcacgcgaaatttagatgctttattattaattcagctagatctaataccttcttgtccctggttctgcag

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtacacctttaaccttttcttgtatgtgatagtagtgggttagtgtgtcaataagttcttaattcggccaaaaatctaatcacgcgaaatttagatgctttattattaattcagctagatctaataccttcttgtccctggttctgcag
 ||||| || |||||||||||||| || |||||  | ||| | |||||||| |||||||| |||||||| |||||||| |||||||||||||||   |     ||  |  |    | | | |  ||| | ||   |||||   |   |   |  || ||   ||  |    |||      |   |||   | ||| || |                                             
GTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAGgtaatcat-----ttctatgtgcattagaaagctatacttgttttttagttcatggttgtttggttcatatcgcgtagg--ctagctctcc---attagaaagctatact---------------------------------------------

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os02g38920.2 (Oryza sativa), 5'ss of exon 10
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtacacctttaaccttttcttgtatgtgatagtagtgggttagtgtgtcaataagttcttaattcggccaaaaatctaatcacgcgaaatttagatgctttattattaattcagctagatctaataccttcttgtccctggttctgcag
 || || || |||||||| |||||||| ||||| ||||   | |  || ||||||||||| || |||||||||||||| ||||||||||||| | |||   |           |  || | ||| || |  |  ||||   ||   |  |     |  ||   ||| |  |          | |                                                             
GTCCAGCATCTTTGATGCCAAGGCTGGCATTGCTTTGAGCGACACGTTCGTGAAGCTTGTGTCCTGGTACGACAACGAATGGGGATACAGgttagtgtgtgctgca-------ttatgaaagtg-taattctctgtta-catgctcacgacagtctgcttaaaccacattttcctctgattgcag------------------------------------------------------------

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 10
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaa---atgtacacctttaaccttttcttgtatgtgatagtagtgggttagtgtgtcaataa-gttcttaattcggccaaaaatctaatcacgcgaaatttagatgctttattattaattcagctagatctaataccttcttgtccctggttctgcag
 || || || || || || ||||||||||||||  | ||  | |||||||| ||||||||  | |||||||||||||||||||| ||||||| |   |  | ||  |  |||  ||     | |   ||| |    |   | | ||    ||  | ||||  ||     ||  || |  |   |                                                                 
GTCGAGCATCTTCGACGCCAAGGCTGGAATTGCTCTTAACGATAACTTTGTCAAGCTTGTCGCCTGGTACGACAACGAGTGGGGTTACAGgtgagccacttgcagttcaaactattaaccatgtacaatactccatgcccaatttgctcttactgatctttcttttttgaactattttctgcag-----------------------------------------------------------------

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G071630_T01 (Zea mays), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtacacctttaaccttttcttgtatgtgatagtagtgggttagtgtgt-caataagttcttaattcggccaaaaatctaatcacgcgaaatttagatgctttattattaattcagctagatctaataccttcttgtccctggttctgcag
 || || || |||||||| |||||||| ||||| |||||    ||||||||||||||||| || |||||||||||||||||||||||||||| | |     ||| ||    |    ||  | ||| | |||  || | |||||  |   || |||| ||| | |    |  |    |  |      || ||                                                       
GTCTAGCATCTTTGATGCGAAGGCTGGCATTGCCTTGAACGGCAACTTTGTGAAGCTTGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagtagttgcctctacagatcatctgactttga-actag--ggcttgtgtgcacttcaatttctaaatcctggtttattttccgtttctt----ttcag-------------------------------------------------------

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G176307_T01 (Zea mays), 5'ss of exon 11
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac-----acctttaaccttttcttgtatgtgat--agtagtgggttagtgtgtcaataagttcttaattcggccaaaaatctaatcacgcgaaatttagatgctttattattaattcagctagatctaataccttcttgtccctggttctgcag
 || || || |||||||| |||||||| ||||| |||||    ||||| |||||||| || || |||||||||||||||||||||||||||| | |   |      |||| | |  ||   ||  | |||    |  | ||| |  || |    | |    ||||||   | |    |||  |||                                                                   
GTCTAGCATCTTTGATGCTAAGGCTGGCATTGCCTTGAACGGCAACTTCGTGAAGCTCGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagttggctagttgccttcaccgattatctgactctgaccaggaggagggcttctgcgcacttcaaaatttaattt--ctatgtctcttttcag------------------------------------------------------------------

upper sequence: GLYMA04G36870.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S9_47V6.2 (Physcomitrella patens), 5'ss of exon 4
----------ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaa--atgtacacctttaaccttttcttgtatgtgatagtagtgggttagtgtgtcaataagttcttaattcggccaaaaatctaatcacgcgaaatttagatgctttattattaattcagctagatctaataccttcttgtccctggttctgcag
           || || ||||| ||| | || || ||| | || |||    | || ||||||||||| ||| | |||||||||||||||||||| ||||||| |  |  |   ||  |||  | ||||| ||   || | |  |  |  | | | |      | | ||   |           |  |||   |  |   |    | |||    |   ||  ||                                  
GCGATAGCCGGTCCAGCATTTTCGATTCCAAAGCAGGATTCGCTTTGGCCGAAAATTTTGTGAAGCTCGTTGCGTGGTACGACAACGAGTGGGGTTACAGgtgatcactttttccactaaagtcttcttttacaagaga-tgtttagaaaatttattttggggattttgcgtatattgttttgcgcatctttctcaccatgagagttttcccgt-ggttttgcag--------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16282181|gb|BI944879.1|BI944879
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16281792|gb|BI944672.1|BI944672
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|17401398|gb|BM178180.1|BM178180
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|33387440|gb|CA850647.1|CA850647
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|31459632|gb|CD401660.1|CD401660
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193713395|gb|FK654464.1|FK654464
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|33388835|gb|CA852042.1|CA852042
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16281345|gb|BI944439.1|BI944439
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16283486|gb|BI945575.1|BI945575
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16280046|gb|BI943754.1|BI943754
EST:     GAACTTTGTGAAGCTTGTTTCTTGGTACGACAACCGAGTGGG-ATACCAG                         CT-ACGTGTCATTGACCTGCT
genomic: GAACTTTGTGAAGCTTGTTTCTTGGTACGACAAC-GAGTGGGGATAC-AGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCT
EST: gi|254329019|gb|GR833391.1|GR833391
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|254319963|gb|GR829259.1|GR829259
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|213608744|gb|DB980754.1|DB980754
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCCCGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16276013|gb|BI941632.1|BI941632
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTTAAG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTC-TTTTTAAG
EST: gi|193537333|gb|FK495390.1|FK495390
EST:     AAGAACCTTGTGAAGCGTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCT
EST: gi|193321248|gb|FK284474.1|FK284474
EST:     AAGAACTTTGTGAAGCTTGTCTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193683185|gb|FK621385.1|FK621385
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|15813897|gb|BI786172.1|BI786172
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|17519507|gb|BM188549.1|BM188549
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|26047146|gb|CA784026.1|CA784026
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|31312127|gb|CD397330.1|CD397330
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|31465564|gb|CD407592.1|CD407592
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16276983|gb|BI942143.1|BI942143
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193692075|gb|FK628062.1|FK628062
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|31308669|gb|CD393872.1|CD393872
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCCAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16276702|gb|BI941999.1|BI941999
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|31463425|gb|CD405453.1|CD405453
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193646843|gb|FK592266.1|FK592266
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|213588186|gb|DB979236.1|DB979236
EST:     AAGAACTTTGTGAAGCTTGTTTCTTTGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|213607805|gb|DB983816.1|DB983816
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193479907|gb|FK447674.1|FK447674
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193559218|gb|FK512071.1|FK512071
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|193460560|gb|FK428001.1|FK428001
EST:     AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|16281767|gb|BI944657.1|BI944657
EST:     AACTTTGNTGNNAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
genomic: AACTTTG-TG--AAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTTGTATTCGTTGCCAAGAAGTCTTTTTAAGG
EST: gi|26047478|gb|CA784257.1|CA784257
EST:     AAAAACTTTGTGAAGCTTGGTTCTTGGTACGACCACGAGTGGGGATACAG                         CTCACGTGTCATTGACCTGCTT
genomic: AAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtac ... ggttctgcagCTCACGTGTCATTGACCTGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGTGAAGCTTGTTTCTTGGTACGACAACGAGTGGGGATACAGgtaaatgtacacctttaaccttttcttgtatgtgatagtagtgggttagtgtgtcaataagttcttaattcggccaaaaatctaatcacgcgaaatttagatgctttattattaattcagctagatctaataccttcttgtccctggttctgcag

- - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC