Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaattatgttaacataattgttgccttttttcagttgataacttgacattattcattttcctgtttccggaaaggtctgttaaccattttttttaatcattgttccag

Basic information

species Glycine max
transcript GLYMA04G36870.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16281792|gb|BI944672.1|BI944672
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16284488|gb|BI946116.1|BI946116
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATNGTTGATGCANAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|17401398|gb|BM178180.1|BM178180
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|33387440|gb|CA850647.1|CA850647
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|31459632|gb|CD401660.1|CD401660
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193713395|gb|FK654464.1|FK654464
EST:     ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|33388835|gb|CA852042.1|CA852042
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16281345|gb|BI944439.1|BI944439
EST:     GGTTTCTCTGAAGATGATGTGGACTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193693250|gb|FK633771.1|FK633771
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTTATTTTTTGATGCAAAGGCTGGAA
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGT-ATTTTT-GATGCAAAGGCTGGAA
EST: gi|16280046|gb|BI943754.1|BI943754
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTNTGTGGGCGATAGCAG                         ATCAAGTATNTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|254329019|gb|GR833391.1|GR833391
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|254319963|gb|GR829259.1|GR829259
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|213608744|gb|DB980754.1|DB980754
EST:     AGTTACACTGAAGATGATGTGGTCTCCAACGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16281224|gb|BI944377.1|BI944377
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTTG
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTT-G
EST: gi|16276013|gb|BI941632.1|BI941632
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193537333|gb|FK495390.1|FK495390
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACCTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193683185|gb|FK621385.1|FK621385
EST:     ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|15813897|gb|BI786172.1|BI786172
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|17519507|gb|BM188549.1|BM188549
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|26047146|gb|CA784026.1|CA784026
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|31312127|gb|CD397330.1|CD397330
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|31465564|gb|CD407592.1|CD407592
EST:     AAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: AAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16282130|gb|BI944853.1|BI944853
EST:     GGTTACCCTGAAGATGATGCGGTCTCCACCGACTATGAAGGCGATAGCAG                         ATCAAGTATTTTTGA
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGA
EST: gi|16276983|gb|BI942143.1|BI942143
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193619477|gb|FK570785.1|FK570785
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGAATAGCAAAGGCTGGAA
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGA-T-GCAAAGGCTGGAA
EST: gi|193692075|gb|FK628062.1|FK628062
EST:     ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|31308669|gb|CD393872.1|CD393872
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16276702|gb|BI941999.1|BI941999
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193686987|gb|FK630342.1|FK630342
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTTATTTTTTGATGCAAAGGCTGGAA
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGT-ATTTTT-GATGCAAAGGCTGGAA
EST: gi|31463425|gb|CD405453.1|CD405453
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|16277862|gb|BI942602.1|BI942602
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTNTGTGGGCGATAGCAG                         ATCAAGTATNTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT
EST: gi|193479907|gb|FK447674.1|FK447674
EST:     ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGGATAGCAG                         ATCAAGTATTTTTGTATGCAAAGGCTGGAATTGCATTGAATAAGAACTTT
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGC-GATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTG-ATGCAAAGGCTGGAATTGCATTGAATAAGAACTTT
EST: gi|193559218|gb|FK512071.1|FK512071
EST:     ACTGAAGATGATGTGGTCTCCATCGACTTTG-GGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGACTGGAATTGCATTGAATAAGAACTTTG
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGG-CTGGAATTGCATTGAATAAGAACTTTG
EST: gi|193460560|gb|FK428001.1|FK428001
EST:     ACTGAAGATGATGTGGTCTCCATCGACTTTGGGGGCGGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG
genomic: ACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGC-GATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG
EST: gi|16281767|gb|BI944657.1|BI944657
EST:     GTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGN
genomic: GTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTG-
EST: gi|26047478|gb|CA784257.1|CA784257
EST:     GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAG                         ATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAAAACTTTGT
genomic: GGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaatta ... attgttccagATCAAGTATTTTTGATGCAAAGGCTGGAATTGCATTGAATAAGAACTTTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGAATCAGAGGGCAAGTTGAAGGGAATTCTTGGTTACACTGAAGATGATGTGGTCTCCACCGACTTTGTGGGCGATAGCAGgtataaattatgttaacataattgttgccttttttcagttgataacttgacattattcattttcctgtttccggaaaggtctgttaaccattttttttaatcattgttccag

- - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGATG