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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatatgttcaaaagcctatttaactgcgcttgtctctagtagttaagtattcaacttatgtgtgtgcatccacttattttcctgttag

Basic information

species Vitis vinifera
transcript Vv06s0004g01090.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G47680.3 (Glycine max), 5'ss of exon 7
TCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatat----------gttcaaaagcctatttaactgcgcttgtctctagtagttaagtattc-aacttatgtgtgtgcatccacttattttcctgttag
||| |||||||||||||| || ||||| || ||||| || ||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||           ||  | |  ||    || | |      |  |   |  ||| | ||  |||   | | | |   ||||  |  | |  ||||  
TCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCAGGTTACCCTGGCAAGGTTATCAGgtatatccatttatttattttatattctcaccaagtacttcctccattgtgaaataaatgttttaacaattattttttgttccaaattatctgttgtttt

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 9
TCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatat--gttcaaaagcctatttaactgcgcttgtc-tctagtagtta----agtattcaacttatgtgtgtgcatccacttattttcctgttag-----
 || |||||||||||||| || ||||| || ||||| || ||||||||||||||||||||||||||||||   ||||||||||| |||||||| ||||||||||||   || |      ||||||  |    || || || |||| ||     | | |  ||   |||| | |  | | | |  ||||  |   |      
-CATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCAGGTTACCTTGGCAAGGTTATCAGGtatatccatttatttatttatttattttatattctcatcaagtacttcttccattgtgaaataaatgtttttttagcaattcttttttgttccaaattat

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 9
TCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatatgttcaaaagcctatttaactgcgcttgtctctagtagttaagtattcaacttatgtgtgtgcatcca--cttatttt------cctgttag
||| ||||| |||||||| || |||||||| ||||| || ||||||||||| |||||  | |||||||||   ||| | ||||| |||||||| ||||||||| |||    |||    ||||   ||   |  | |   ||    |  |  |    |||  | | |     ||  ||||||||       |||||||
TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTATTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGgtacatggattaaattacatttctatggagtaatttactgtgcaaatttcattcctttacatattttatctcaatcttattttaccttgtctgttag

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 9
TCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatatg--------ttcaaaagcctatttaactgcgcttgtctctagtagttaagtattcaacttatgtgtgtgcatccacttattttcctgttag-----
||| ||||| |||||||| || |||||||| ||||| || ||||||||||| |||||  ||||||| |||   ||| | ||||| |||||||| || |||||| |||        || | | ||||||  |       ||   |     | ||   |  |  || ||| |   | ||  |  |  ||| |||  ||      
TCATTTGGGGAGAACTGCTAGTAGAAGAGATGATCTTGAATCTCTTGCATACACACTAGTCTTCCTCCATAAGGGCCGATTACCATGGCAAGGTTACCAGgtacatgggatttattttacatgcctatggagtattttttactttgcaaatttcgttcctttacatattttatttcaatctttattttaccttgtatgttag

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 9
TCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatatgttcaaaagcctatttaactgcgcttgtctctagtagttaagt-attcaacttatgtgtgtgcatccacttattttcctgttag
||| || || |||||||| |||||||| || ||||| || ||  | ||||||||||| ||||| ||||| || || || || || |||||||| |||||||||  ||   |     | ||||   |  | | |  ||  || |||   | ||||    | ||    | |   | |||| |    | | ||
TCATTTAGGGAGAACTGCTAGCAGAAGGGATGATCTGGAATCATTAGCATATACACTGATCTTTCTTCACCGAGGTAGATTGCCATGGCAAGGATATCAGgtac-tgcagacctatc-attttgttttg-tagaatcatgttgttgcatgattctttctctgctaatcctgtctcttactcaattttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110704026|gb|EE081433.1|EE081433
EST:     ATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAG                         GGCGACAATAAGTCCTTCCTAGTTTGCAAGAAAAAGATGGCAACTTCTCCT
genomic: ATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatatgttc ... ttcctgttagGGCGACAATAAGTCCTTCCTAGTTTGCAAGAAAAAGATGGCAACTTCTCCT
EST: gi|34543792|gb|CF512024.1|CF512024
EST:     ATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAG                         GGCGACAATAAGTCCTTCCTAGTTTGCAAGAAAAAGATGGCAACTTCTCCT
genomic: ATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatatgttc ... ttcctgttagGGCGACAATAAGTCCTTCCTAGTTTGCAAGAAAAAGATGGCAACTTCTCCT
EST: gi|161716446|gb|FC068431.1|FC068431
EST:     ATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAG                         GGCGACAATAAGTCCTTCCTAGTTTGCAAGAAAAAGATGGCAACTTCTCCT
genomic: ATACACTCATCTTCCTTCATCGTGGCAGGTTACCCTGGCAAGGCTATCAGgtatatgttc ... ttcctgttagGGCGACAATAAGTCCTTCCTAGTTTGCAAGAAAAAGATGGCAACTTCTCCT