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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAAGAGCCAAACTACTCCAAGCTAATATCTCTGTTTGAGGGATTAATTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAGgtaattaaaccctgattacagtgaatgtatgaacttgatcttcctttcttgggtgctcattagggatttgttctcattattgtaattgttgctag

Basic information

species Vitis vinifera
transcript Vv06s0004g01090.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 10
TGATGAAGAGCCAAACTACTCCAAGCTAATATCTCTGTTTGAGGGATTAATTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAGgtaatta---aaccctgattacagtgaatgtatgaacttgatcttcctttcttgggtgctcattagggatttgttctcattattgtaattgttgctag----
||||||||| || || || ||||||||||||||| ||||||| ||    |||||||| ||||||||  |  ||||||| || ||||| ||||| || ||||||||||   ||   |||||   |      | |     ||   | | ||| |    | |||    ||    ||| |   |  |   |||  | | |      
TGATGAAGAACCTAATTATTCCAAGCTAATATCTTTGTTTGACGGTGCGATTGGACCCAATCCAGCATTGCGGCCAATTAATACTGAAGGTGCCCAAAAGgtaattactgaagtgtgattttggatgtcttgtatttctggcttacttttttcttttcctctactggctggtgtacgtctactcaaaatcatagtttagcag

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 10
TGATGAAGAGCCAAACTACTCCAAGCTAATATCTCTGTTTGAGGGATTAATTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAGgtaatta---aaccctgattacagtgaatgtatgaacttgatcttcctttcttgggtgctcattagggatttgttctcattattgtaattgttgctag----
||||||||| || || || ||||||||||||||| ||||||| ||    |||||||| ||||||||  |  ||||||| || ||||| ||||| || ||||||||||   ||   || ||   | |    | |     ||   | | ||| |    | ||| || ||    ||| |   |  |   |||  | | | |    
TGATGAAGAACCTAATTATTCCAAGCTAATATCTTTGTTTGATGGTACGATTGGACCCAATCCAGCATTGCGGCCAATTAATACTGAAGGTGCCCAAAAGgtaattactgaagtgtggttttggaggtcttgtatttctggcttacttttttcttttcctcttttggctggtgtacgtctactcaaaatcatagtttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110704026|gb|EE081433.1|EE081433
EST:     TTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAG                         ATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAA
genomic: TTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAGgtaattaaac ... ttgttgctagATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAA
EST: gi|161718474|gb|FC065043.1|FC065043
EST:     TTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAG                         ATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAA
genomic: TTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAGgtaattaaac ... ttgttgctagATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAA
EST: gi|34543792|gb|CF512024.1|CF512024
EST:     TTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAG                         ATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAA
genomic: TTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAGgtaattaaac ... ttgttgctagATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAA
EST: gi|161716446|gb|FC068431.1|FC068431
EST:     TTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAG                         ATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAA
genomic: TTGGACCTAATCCAGCTATAAGGCCAATAAACACTGATGGTGCTCAGAAGgtaattaaac ... ttgttgctagATTATCTATCAAGTTGGTCAAAAACGGGGTAGGTTGAATGTTGAGGAAGAA