Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattctggtgtccatagttttttattttttaattagttaattttaataataataataataataataatttaggatcatttttctgacataccag

Basic information

species Vitis vinifera
transcript Vv06s0004g01090.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 12
TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct--ggtgtccatagttttttattttttaattagttaatt-ttaataataataataataataataatttaggatcatttttctgacataccag
 ||||| || ||||| || ||||| ||||| ||||||||||||||||||||||| ||  ||   ||||||||| |  ||||||| || |||||||||||||||| ||| |  | | |  |||  |   || || | |  || |||  | |   |  | ||| | || |   |     | | | ||| |  |    | |  |
-TGTGTGGCTTCTTGTTCCAATCTCTGGGCCCTTATTATGGATGCTGGAACTGGCTTTTCAAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGGtgaaattatatgatttatataaatcagtacttgtcatataattagctatctgttttcata-tgatgaatcttgcccatg-tgattctgtttcttttcagg

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G47680.3 (Glycine max), 5'ss of exon 10
TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct--ggtgtccatagttttttattttttaattagttaatt-ttaataataataataataataataatttaggatcatttttctgacataccag
|||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| ||  ||   ||||||||| |  ||||||| || |||||||||||||||| ||| |  | | |   ||  |   ||  | | |  || |||  | |   |  | ||| | || |   |    |  |||  | |||||    |  |||
TTGTGTGGCTTCTTGTTCCAATCTCTGGGCCCTTATTATGGATGCAGGAACTGGCTTTTCAAGTCAAGTTTATAAGTTGTCACCATTTTTCTTACACAAGgtgaaattatatgatttatgtaaatcagtacatgtcatataattagctatctgttttcata-tgatgaatcttgcctgtgattctgtttct----tttcag

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 12
TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattctggtgtccatagttttttattttttaattagttaattttaataataataataataataataatttaggatcatttttctgacataccag
||||||  | ||||| |  ||||| ||||| |||||||||||||||||||||||||| |||   ||||||||  |  ||||| | || ||||| |||||||||| ||  || |||     || ||  | ||| |  ||| |  | ||  ||   | ||| | ||   ||   | |   |   ||| | |         
TTGTGTGTCTTCTTGTTGCAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGgtgaaata-tgctgtat---gtcttgcagtttct--ttaatctaattccatgtgattaaaattatccatg--tgactgttgctttgcag---------

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 12
TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattctggtgtccatagttttttattttttaattagttaattttaataataataataataataataatttaggatcatttttctgacataccag
||||||  | ||||| |  ||||| ||||| |||||||||||||||||||||||||| |||   ||||||||  |  ||||| | || ||||| |||||||||| ||  || |||     || ||  | ||| |  ||| |  | ||  ||   | |||   ||   ||   | |   |   ||| | |         
TTGTGTGTCTTCTTGTTGCAATCTTTGGGCTCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACCTTTTTCTTGCACAAGgtgaaata-tgctgtat---gtcttgcagtttct--ttaatctaattccatgtgattaaacttatccatg--tgactgttgctttgcag---------

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 12
TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattctggtgtccata-gttttttattttttaattagttaattttaataataataataataataataatttaggatcatttttctgacataccag
 |||||  |||| || || ||||| |||||| | || ||||||||||||||||| ||||| |||||||| |||||||| || ||| | ||||| ||||||||  |   ||| |||   |  |||  ||||||||  ||  ||   || |   ||        || ||  ||  | ||  | | || | |     | |||
CTGTGTATCATCATGTTCGAATCTCTGGGCATTGATAATGGATGCTGGAACTGGCTTCACGCACCAAGTCTATGAACTCTCTCCTGTATTCTTGCACAAGgttgt---ctgatgtttctctgttagttatttttatatctgt--gttctgtcaa-------gatgatcttacctgagagtgaattctgttttgaatcag

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 12
TTGTGTTGCATCTTGCTCAAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattctggtgtccat--agt-tttttattttttaatt--agttaattttaataataataataataataataatttaggatcatttttctgacataccag
  |||| || |||||  ||||||||||||| |||||||||||||| || || || ||||||  ||||||||| || ||||| | | | ||| | || ||||| |       |||    |  ||| ||| |  || ||  ||       || |   |     |  |  |      || |||  ||  |  ||   |     |||
CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACGGGATTCACAGCCCAAGTTTACGAGCTGTCTCATGTTTTCCTCCATAAGgtaagtgctcagtgattgtttagtgtttctgcttgttgtttttgaaggatctagttggccctcttcttttgtggaaattaacatggtcattggtattctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110704026|gb|EE081433.1|EE081433
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACCAG                         GAATGGATTAGGGAAC
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAAC
EST: gi|352786685|gb|FQ479892.1|FQ479892
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|351049335|gb|FQ429078.1|FQ429078
EST:     CACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|351057055|gb|FQ448572.1|FQ448572
EST:     CACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|161718474|gb|FC065043.1|FC065043
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|110363867|gb|EC927492.1|EC927492
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|110698357|gb|EE075776.1|EE075776
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTACGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|351049006|gb|FQ431550.1|FQ431550
EST:     CACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|34543792|gb|CF512024.1|CF512024
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|110382715|gb|EC947034.1|EC947034
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|110388914|gb|EC953715.1|EC953715
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|110698358|gb|EE075777.1|EE075777
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
EST: gi|110698359|gb|EE075778.1|EE075778
EST:     CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAG                         GAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT
genomic: CTGGTTTCACACACCAAGTTTATGAACTGTCACCTTTCTTCTTACACAAGgtgatattct ... gacataccagGAATGGATTATGGAACAATGGGAGAGGAACTTTTATATCAGTTCCATTGCT