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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgatgttgtgtttgtgggccatgctttgtgatttttgaacttattttttttaatccttcattcttgattatttttactgtttgcttcatccag

Basic information

species Vitis vinifera
transcript Vv06s0004g01090.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G017835_T03 (Zea mays), 5'ss of exon 8
CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgatgttgtgtttgtgggccatgctttgt---gatttttgaacttattttttttaatccttcattcttgattatttttactgtttgcttcatccag
||||||||||||| || | |||||||||||||||||||   |||||||| || ||||||   |||||||       | |      | |    |||    | |    || | |  |||  || |         |  ||     |   | | |  ||  | | | ||| ||
CAACAAAGTGGAGAGATACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccactttgtctcctatatttcatataatattcatatctgtctactagttatgacattagttctatgtccaaacttctctcttgccttcataatctag

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G47680.1 (Glycine max), 5'ss of exon 8
CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgatgttgtgtttgtgggccatgctttgtgattt---ttgaacttatt--------ttttttaatccttcattcttgattat--ttttactgtttgcttcatccag-------------------
||||||||||||| ||||   | | |||||||||||||||||||||||| || |||||||||||||||| |  |  | |  |   | | |    | || |   |||    |||    ||||        |||| |  |  |   ||| || ||||  |||  |  | |||||||  |                     
CAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCTGATATGTTTAGgttaccttttttctttccttttgatttttctcttaaattctacttgtttctattattatggtttttgttgttttatgttcatggttatcatttatccatctgcttcagtcttatatttttaatttttgcag

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 8
CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgatgttgtgtttgtgggccatgctt----tgtgatttttgaacttattttttttaatc-cttcattcttgattatttttactgtttgcttcatccag------------------------------------------------
 |||||||||||| ||||   | | |||||||||||||||||||||||| || |||||||||||||||| |  |  |    | ||| ||     | |||    | |  || |||   ||||| | |||| |   |||  |  | |   |||||  |||||  |       |                                                
-AACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGGttacctttttccttctttttgattttttcttttattctacttgttgctattattatctttacttgtttctattattacggtttttgttgtttcatgttcatggttatcatttatcaatctgcttcagtcttatatttttaatttctgtaga

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 8
CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgatgttgtgtttgtgggccatgctttgtgattt----ttgaactta--ttttttttaatccttcattcttgattatttttactg---tttgcttcatccag---
||||||| ||||| ||||   | | ||| ||||||||||| |||||||| || ||||||||||||||||    |                 |  | ||||     ||    ||| | ||   || ||||||||  ||   |  | || | | ||  ||    ||   |  |   |   
CAACAAAATGGAGAGACACCTCCAGTGGACAGCATGTTGACTATGATCAACGCCCTGATATGTTTAGgtattcttccccccctccccccctcttttcttttcttcttccccttgcagttctcttctttttaatggttttcttgttatcaatgttcttgaaccttatctttttatgtag

upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 8
CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtga-attgatgttgtgtttgtgggccatgctttgtg--atttttgaacttattttttttaatccttcattcttgattatttttactgtttgcttcatccag
| ||||||||||| ||  ||| ||  || || ||||||||||||||||| || |||||||||||||||| | ||   |  |    ||       ||  |||||   ||  | |  ||||  |||| |      ||  ||||  | |||||||  |              
CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgttttatactcgctcttaccttttgttgaatctctctcttcttaatttttatag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715152|gb|FC063639.1|FC063639
EST:     AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAG                         GGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
genomic: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgat ... cttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
EST: gi|110704026|gb|EE081433.1|EE081433
EST:     AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAG                         GGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
genomic: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgat ... cttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
EST: gi|34543792|gb|CF512024.1|CF512024
EST:     AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAG                         GGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
genomic: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgat ... cttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
EST: gi|161716446|gb|FC068431.1|FC068431
EST:     AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAG                         GGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
genomic: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgat ... cttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG