Sequence
atgc intronic sequence ATGC exonic sequenceGTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G47680.2 (Glycine max), 5'ss of exon 3
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaat--ctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
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GTGGCTTTGAAATTTGAGCACAGGAACAGCAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAAgtaggtgctttgtttatgtt---gcaagagatatgtgtcgacgattgctttcggttatgcacaagatttgtgtttaagtgaaattgcctgagtttt---ttta-----tttatttaatgttttgttttgtgaaaag--------
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G47680.3 (Glycine max), 5'ss of exon 1
--------------------------GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaat--ctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
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CATTGACTGATTCTTTCGTGTTTCAGGTGGCTTTGAAATTTGAGCACAGGAACAGCAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAAgtaggtgctttgtttatgtt---gcaagagatatgtgtcgacgattgctttcggttatgcacaagatttgtgtttaagtgaaattgcctgagtttt---ttta-----tttatttaatgttttgttttgtgaaaag--------
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 3
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
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-TGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAAGtaggtgctttgtttatgtt---gcaagagatatatgttgtcaat------tgctttcgataagtga------------atttgcctgagttttttgttt----tgttttgtgaaaagc-----------------------
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 3
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
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GTGGCTCTGAAATTTGAACATAGAAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggtaccttcttacgtttatattaatatatatttttttttaattatcatgatttgtgatcaagta-------tgt---atagctaaagtttgacttttatg--ttatgtcaaaag-------------------------
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 3
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
|| ||| ||||||| || || || ||||| || ||||| |||||||||||||| || |||||||| || |||||||| | || | ||| | || | | ||| || | |||| | | | ||| | ||| || | || || |||| || | | |||
GTGGCTCTGAAATTTGAACATAGGAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggcactttcttacgtttatgttattttactaattttt-taaaataaatttatcttgatttgtgatcaagtatgt---atagctaaagtttaacttttatg--ttatgtcaaaag-------------------------
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 3
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttattt-ctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
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GTTGCTCTAAAGTTTGAGCATAGGAGCAGCAAGGGTTGCAACTATGGTCCTCCACATGAGTGGCAGGTTTACAAgtgggtgtttcgattctcct--gtctttctttcaatgtttcttaaattcatttacctggattgtaggtgcttccttgacttgaaatgtgaaattgacattt-tacttttattgtgaacag-----------------------
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ31718 (Selaginella moellendorffii), 5'ss of exon 3
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
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GTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACACgtatgt---agcattgtttt------ggctttttttttctttgtgttttgtttct---aagctatcgtgttttatgtttgcag-----------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715152|gb|FC063639.1|FC063639EST: AACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAA CACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCA
genomic: AACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctga ... tgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacag
- - - - - - - - - - - - - - GCAAAG