Sequence
atgc intronic sequence ATGC exonic sequenceCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGgtatgatccacagcaatgtgtcttttgttttttatatctttatgtattggtctaacattttttatatgttcaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 4
CACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGgtatgatcca--cagcaatgtgtcttttgttttttatatcttt--atgtattggtctaac-attttttatatgttcaaag
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CACCCTTGGGGGTAGTTATGGAATCCCAAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGgtatgatctattctacacaacaaccgttgcactatatcattgccaacttaacagttcaactattccttttatatgcag--
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G47680.3 (Glycine max), 5'ss of exon 2
CACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGgtatgatccacagcaatgtgtcttttgttttttatatctttatgtattggtctaacattttt-tatatgttcaaag----
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CACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTACAAAGGGAGACAAGGGGAATATTATGTGATGgtatgacctaca-caacaaccattttattttctcgtcaccaactttactatagaacatttttatttgggtacgtatgcag
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 4
CACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGgtatgatccacagcaatgtgtcttttgtttttt-----atatctttatgtattggtctaacattttttatatgttcaaag-
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-ACCCTTGGTGGCAGCCATGGAATACCTAAAGTACACTACAAAGGAAGACAAGGGGAATATTATGTGATGGtatgacctaca-caacaaccattttattttctcatcaccaactttac-tatttaatttttttttttggtatgtatgcagg
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 4
CACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGgtatgatccacagcaatgtgtcttttgttttttatatcttta-----tgtattggtctaacattttttatatgttcaaag
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CACCCTTGGGGGTAGTTATGGAATACCAAAAGTACACTACAAAGGAAGACAAGGAGAATATTATGTGATGgtatgatctattctacccaacaatcattgcactatatcattgccatcttaactgttcaactactgcgtttatatgcag--
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 4
CACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGgtatga---tccacagcaatgtgtcttttgttttttatatctttatgtatt------ggtctaacattttttatatgttcaaag-----
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CACCTTGGGTGGTAGCCATGGAGTCCCTAGAGTACATTTCAAAGGCAGGCAAGGAGACTATTATGTCATGgtactggattccccctttctcctatttctgtttttttctcctgtctgtatcattgaagttagatcctctcttctttgttttggcctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715152|gb|FC063639.1|FC063639EST: GAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGG
genomic: GAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGgtatgatcca ... atgttcaaagGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATGgtatgatccacagcaatgtgtcttttgttttttatatctttatgtattggtctaacattttttatatgttcaaag
- - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA