Sequence
atgc intronic sequence ATGC exonic sequenceGTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCgtgagtatcccacttttacatgatttgatatgtgattttgtcgtcgttactttctgctgaattgaaaattcgatatgtttctgagcttggttactagttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 5
GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCgtgagtatc------ccacttttacatgatttgatatgtgattttgtcgtcgttactttctgctgaattgaaaattcgatatgtttctgagcttggttactagttt
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-TTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCCTCAAGCCAGGCGtgagtataagctaaccctttttattgtatctgctgtgtg-ttttataggccttgtgtttta---aaatgagagct-attataattgattttgtgtttataggctt
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCgtgagtatcccacttttacatgatttgatatgtgattttgtcgtcgttactttctgctgaattgaaaattcgatatgtttc-tgagcttggttactagttt--
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GTTATGGACATGCTTGGGCCTAGCTTATGGGATTTATGGAATACTTCAGGGCAAGCgtgagtctcca--ttacacatccttgggga-gctcttgtctctttttcaattagcgttgtttccatacatgagtatcctaagttaatttggattcttttggaa
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCgtgagtatc--ccacttttacatgat-ttgatatgtgatt----ttgtcgtcgttactttctgctgaattgaaaattcgatatgtttctgagcttggttactagttt
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GTCATGGATATGCTTGGGCCAAGTCTCTGGGATGTCTGGAACTCTTCAGGTCAAGCgtaagtatttactaccctgatgttctcttcgtctattattactgctggcgaggatcgtttatcaccaattgcagagaaaaattgatcccgtaattttttttttgcag
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ38433 (Selaginella moellendorffii), 5'ss of exon 4
--------------------------------------------GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCgtgagtatcccacttttacatgatttgatatgtgattttgtcgtcgttactttctgctgaattgaaaattcgatatgtttctgagcttggttactagttt
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CTCGAGTGCACCATAAGGGGCGTCAAGGAGATTACTACGTAATGGTTATGGACATGCTTGGGCCTAGCTTGTGGGATGTGTGGAACTCGTCAGGACAAGCgtaagtagct--ctttcgcctctctcgtcct---aatctgccaatttttttaacag--------------------------------------------
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ31718 (Selaginella moellendorffii), 5'ss of exon 4
--------------------------------------------GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCgtgagtatcccacttttacatgatttgatatgtgattttgtcgtcgttactttctgctgaattgaaaattcgatatgtttctgagcttggttactagttt
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CTCGAGTGCACCATAAGGGGCGTCAAGGAGATTACTACGTAATGGTTATGGACATGCTTGGGCCTAGCTTGTGGGATGTTTGGAACTCGTCAGGACAAGCgtaagtagct--ctttcgcctccctcgtcct---aatctgccaatttttttaacag--------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715152|gb|FC063639.1|FC063639EST: GACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGC GATGTCTTCAGAAATGGTAGCTTGTATTGCAGTTGAGTCTTTATCAATCCT
genomic: GACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCgtgagtatcc ... atattcacagGATGTCTTCAGAAATGGTAGCTTGTATTGCAGTTGAGTCTTTATCAATCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTATGGACATGCTAGGGCCTAGCTTATGGGATGTCTGGAATTCTTCAGGGCAAGCgtgagtatcccacttttacatgatttgatatgtgattttgtcgtcgttactttctgctgaattgaaaattcgatatgtttctgagcttggttactagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa