1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgaattgatgttgtgtttgtgggccatgctttgtgatttttgaacttattttttttaatccttcattcttgattatttttactgtttgcttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCAT
species | Vitis vinifera |
transcript | Vv06s0004g01090.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAG GGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAGEST: gi|110704026|gb|EE081433.1|EE081433
genomic: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgat ... cttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
EST: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAG GGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAGEST: gi|34543792|gb|CF512024.1|CF512024
genomic: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgat ... cttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
EST: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAG GGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAGEST: gi|161716446|gb|FC068431.1|FC068431
genomic: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgat ... cttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
EST: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAG GGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
genomic: AGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgat ... cttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAG
acttattttttttaatccttcattcttgattatttttactgtttgcttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCAT
tttgcttc CT-rich tract
attcttgattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattgatgttgtgtttgtgggccatgctttgtgatttttgaacttattttttttaatccttcattcttgattatttttactgtttgcttcatccagGGGAACTGTGAGATATGCTAGTGTTCATGCTCACTTGGGAAGAACTGCCAGCAGAAGAGACGATCTAGAGTCTCTTGCATATACACTCATCTTCCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA