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TTATGTGCATGGAGATGTAAAACCGGAAAACTTTTTACTGGGCCAGCCATCTACAACGCAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAGgtaagttaattttttagagccttttcaagtttatccttttatgctgcctataaaaaaaggtttatccttttatgctttttatatttttgttatcatcaattcataatgttgcag
species | Vitis vinifera |
transcript | Vv06s0004g01090.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCCATCTACAACACAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAG CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCEST: gi|34543792|gb|CF512024.1|CF512024
genomic: GCCATCTACAACGCAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAGgtaagttaat ... aatgttgcagCAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGC
EST: CAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAG CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCEST: gi|161716446|gb|FC068431.1|FC068431
genomic: CAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAGgtaagttaat ... aatgttgcagCAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGC
EST: GCCATCTACAACACAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAG CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGC
genomic: GCCATCTACAACGCAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAGgtaagttaat ... aatgttgcagCAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGTGCATGGAGATGTAAAACCGGAAAACTTTTTACTGGGCCAGCCATCTACAACGCAAGAGAAGAAGTTGTTTCTTGTTGACCTTGGATTAGgtaagttaattttttagagccttttcaagtttatccttttatgctgcctataaaaaaaggtttatccttttatgctttttatatttttgttatcatcaattcataatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT