Sequence
atgc intronic sequence ATGC exonic sequencegtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G47680.3 (Glycine max), 3'ss of exon 1
gtatgtctgaggtttcttttcaaacaggatatgattatttgcaat--ctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG
||| || |||| | || || || || | | | || |||| | | || | || | || | || |||| || | | |||| | ||||||| ||||||||| | || ||||| || ||||||||||||||| | |||| ||||||||| ||||| | ||||| || ||||||||||||
gtaggtgctttgtttatgtt---gcaagagatatgtgtcgacgattgctttcggttatgcacaagatttgtgtttaagtgaaattgcctgagtttt---ttta-----tttatttaatgttttgttttg--------tgaaaagCACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTACAAAGGGAGACAAGGGGAATATTATGTGATG
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G44050.1 (Glycine max), 3'ss of exon 3
gtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG
| | | ||| | ||| | ||| | ||| | ||| | | | || | || | || |||| || ||| | | | || ||||| || || || ||| ||||| | || | ||||||||||||||||| |||||||| ||||||||||||
-------------------------------------gtaggtaccttcttacgtttatattaatatatatttttttttaattatcatgatttgtgatcaagtatgtatagctaaagtttgacttttatgttatgtcaaaagCACCCTTGGGGGTAGTTATGGAATCCCAAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATG
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G53810.1 (Glycine max), 3'ss of exon 3
gtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG-
| |||| ||| | | | | || | ||||||| | | | || | || | | ||||||||| || ||| ||| ||||| || |||||||| |||||| | |||| ||||||||| ||||||| ||||| || ||||||||||||
---------------------------------------taggtgctttgtttatgttgcaaga-gatatatgttgtcaatt-------gctttcgataagtgaatttgcctgagttttttgttttgttt--tgtgaaa-agcACCCTTGGTGGCAGCCATGGAATACCTAAAGTACACTACAAAGGAAGACAAGGGGAATATTATGTGATGG
upper sequence: Vv06s0004g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG
| || | |||| | | | || ||| |||| ||| || |||| | || |||| | | ||| | || ||| | | || | | ||| ||| |||||| |||||||| ||||||| || |||||||| ||||||||||| | ||||| | |||||||||||||||||| |||
--------gtgggtg--tttcgattctcctgtctttcttt-caatgtttcttaaattcatttacctgga----ttgt--aggtgctt----ccttgacttgaaatgtgaaattgacattttacttt---tattgt-gaacagCACCTTGGGTGGTAGCCATGGAGTCCCTAGAGTACATTTCAAAGGCAGGCAAGGAGACTATTATGTCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715152|gb|FC063639.1|FC063639EST: AACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAA CACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCA
genomic: AACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAAgtatgtctga ... tgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG
atttacaatttctatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtctgaggtttcttttcaaacaggatatgattatttgcaatctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA