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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTCACCAATACACTTATACTGCCTGTTATAAATGGGCCTACAGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactttctatgtatttatacacagacagctactaagtttgcttagaatccaatgtatattgttgttattgttattattattattataatgcag

Basic information

species Glycine max
transcript GLYMA12G08720.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08720.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 8
TTATTTCACCAATACACTTATACTGCCTGTTATAAATGGGCCTACAGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactttctatgtatttatacacagacagctactaagtttgcttagaatccaatgtatattgttgttattgttattattattattataatgcag-----------------------------------
 ||||||||||| |||||||| || || ||||| ||||||||||||||||| |||    | ||||   || | ||||| ||||| || ||||| ||||||    |    ||| |  |  |   || | || |  |   |  ||| | | |  || | | | ||  |||  ||    ||  | || || | ||                                    
CTATTTCACCAACACACTTATTCTTCCGGTTATCAATGGGCCTACAGAGGGGCTTGCACTTATATTTGTCAGCCACTTCTTCACAGCCATCGTCGgtatgcttctctcttgtctgcaatccatgaaaacttc--accctatttaaagtgct-tggacaatctttctatacttgggtttggtctt-tacttcaactctatctttcttctttttttttttctgtctaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021674|gb|CX708415.1|CX708415
EST:     GTAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGG                         GTGCTGAGTGGTGGGTTCAGCAATTTGAAAAGTCTTTGCCATTCTTAAATT
genomic: G-AGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactt ... tataatgcagGTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATT
EST: gi|16996551|gb|BM085923.1|BM085923
EST:     AGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGG                         GTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATT
genomic: AGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactt ... tataatgcagGTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATT