Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggactttctatgtatttatacacagacagctactaagtttgcttagaatccaatgtatattgttgttattgttattattattattataatgcagGTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATTGGCTTCCTTATCTTGGGG

Basic information

species Glycine max
transcript GLYMA12G08720.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08720.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0010g00950.t01 (Vitis vinifera), 3'ss of exon 9
--------------------gtatggactttctatgtatttatacacagacagctactaagtttgcttagaatccaatgtatattgttgttattgttattattattattataa---------tgcagGTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATTGGCTTCCTTATCTTGGGG
                    |||      |||| |  |||||||   | |    | || |   |  ||  ||||| |   ||  |    || |  || ||     ||  || |         | |||||||| | |||||||||||  |||||||||||||| |||| || |||| |||||| || | | |    |
gtatgtgtctgcaccctgaagtactagtcttcttt-catttatatcaatatgcatgctgaaact-tttgaaatcccacacatgattactttttcctttttgacggtaacatgagtcctccttttcagGTGCTCAATGGTGGGTTCAAGAATTTGGAAAGTCTATGCCCTTTTTAAGTTGGCTGCCATTTGTATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021674|gb|CX708415.1|CX708415
EST:     GTAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGG                         GTGCTGAGTGGTGGGTTCAGCAATTTGAAAAGTCTTTGCCATTCTTAAATT
genomic: G-AGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactt ... tataatgcagGTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATT
EST: gi|16996551|gb|BM085923.1|BM085923
EST:     AGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGG                         GTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATT
genomic: AGAGGGTCTTATGATAATATACATCTGTCACTTTTTCACTGCTATCGTGGgtatggactt ... tataatgcagGTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttagaatccaatgtatattgttgttattgttattattattattataatgcagGTGCTGAGTGGTGGGTTCAGCAATTTGGAAAGTCTTTGCCATTCTTAAATTGGCTTCCTTATCTTGGGG
            aatgtatattgttgtt  TA-rich tract