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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactacctttttttttccttgtaaagcaaaatattcttaaagaagagcaagaaacaagtgtattaaaatacttagtactatgactctatttcttttacttaacaattttgtttctatgaacacag

Basic information

species Glycine max
transcript GLYMA12G08720.1
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814309|gb|BQ298787.1|BQ298787
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGNTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|57574463|gb|CX547438.1|CX547438
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|207683223|gb|GD665930.1|GD665930
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|22932418|gb|BU549557.1|BU549557
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|20814308|gb|BQ298786.1|BQ298786
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|13563545|gb|BG551765.1|BG551765
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|58016371|gb|CX703113.1|CX703113
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTCTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|58021674|gb|CX708415.1|CX708415
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|14991068|gb|BI316741.1|BI316741
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGCCCACTGTGCATGTGCAG                         GGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|58022824|gb|CX709565.1|CX709565
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
EST: gi|58023371|gb|CX710112.1|CX710112
EST:     TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAG                         TGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG
genomic: TCCTTTAGTAGATGAGAGACTAGTTCTTCTTGGTTACTGTGCATTTTCAGgtacaactac ... atgaacacagTGACACTATACTTGCATTTTGCCACATCAGTCATTCATGAAATTACCAATG